def download(self, task: int):
task = self.task_provider.by_id(
task, joinedload(Task.dag_rel, innerjoin=True))
folder = join(TASK_FOLDER, str(task.id))
self.download_dag(task.dag, folder)
config = Config.from_yaml(task.dag_rel.config)
info = config['info']
try:
data_folder = os.path.join(DATA_FOLDER, info['project'])
os.makedirs(data_folder, exist_ok=True)
os.symlink(data_folder,
os.path.join(folder, 'data'),
target_is_directory=True)
except FileExistsError:
pass
try:
model_folder = os.path.join(MODEL_FOLDER, info['project'])
os.makedirs(model_folder, exist_ok=True)
os.symlink(model_folder,
os.path.join(folder, 'models'),
target_is_directory=True)
except FileExistsError:
pass
sys.path.insert(0, folder)
return folder
def download(self, task: int):
task = self.task_provider.by_id(
task, joinedload(Task.dag_rel, innerjoin=True))
folder = join(TASK_FOLDER, str(task.id))
os.makedirs(folder, exist_ok=True)
items = self.provider.by_dag(task.dag)
items = sorted(items, key=lambda x: x[1] is not None)
for item, file in items:
path = os.path.join(folder, item.path)
if item.is_dir:
os.makedirs(path, exist_ok=True)
else:
with open(path, 'wb') as f:
f.write(file.content)
config = Config.from_yaml(task.dag_rel.config)
info = config['info']
try:
data_folder = os.path.join(DATA_FOLDER, info['project'])
os.makedirs(data_folder, exist_ok=True)
os.symlink(data_folder, os.path.join(folder, 'data'))
except FileExistsError:
pass
try:
model_folder = os.path.join(MODEL_FOLDER, info['project'])
os.makedirs(model_folder, exist_ok=True)
os.symlink(model_folder, os.path.join(folder, 'models'))
except FileExistsError:
pass
sys.path.insert(0, folder)
return folder
def create_base(self):
self.info('create_base')
self.provider = TaskProvider(self.session)
self.library_provider = DagLibraryProvider(self.session)
self.storage = Storage(self.session)
self.task = self.provider.by_id(
self.id, joinedload(Task.dag_rel, innerjoin=True))
if not self.task:
raise Exception(f'task with id = {self.id} is not found')
self.dag = self.task.dag_rel
self.executor = None
self.hostname = socket.gethostname()
self.docker_img = DOCKER_IMG
self.worker_index = os.getenv('WORKER_INDEX', -1)
self.queue_personal = f'{self.hostname}_{self.docker_img}_' \
f'{self.worker_index}'
self.config = Config.from_yaml(self.dag.config)
self.executor_type = self.config['executors'][
self.task.executor]['type']
def create_base(self):
self.info('create_base')
if app.current_task:
app.current_task.update_state(state=states.SUCCESS)
app.control.revoke(app.current_task.request.id, terminate=True)
self.provider = TaskProvider(self.session)
self.library_provider = DagLibraryProvider(self.session)
self.storage = Storage(self.session)
self.task = self.provider.by_id(
self.id, joinedload(Task.dag_rel, innerjoin=True))
if not self.task:
raise Exception(f'task with id = {self.id} is not found')
self.dag = self.task.dag_rel
self.executor = None
self.hostname = socket.gethostname()
self.docker_img = DOCKER_IMG
self.worker_index = os.getenv('WORKER_INDEX', -1)
self.queue_personal = f'{self.hostname}_{self.docker_img}_' \
f'{self.worker_index}'
self.config = Config.from_yaml(self.dag.config)
set_global_seed(self.config['info'].get('seed', 0))
self.executor_type = self.config['executors'][
self.task.executor]['type']
executor = self.config['executors'][self.task.executor]
if os.getenv('CUDA_VISIBLE_DEVICES', '').strip() != '':
cuda_visible_devices = os.getenv('CUDA_VISIBLE_DEVICES',
'').split(',')
self.task.gpu_assigned = ','.join([
cuda_visible_devices[int(g)]
for g in (self.task.gpu_assigned or '').split(',')
])
cuda_visible_devices = self.task.gpu_assigned
else:
cuda_visible_devices = self.task.gpu_assigned
cuda_visible_devices = cuda_visible_devices or ''
env = {
'MKL_NUM_THREADS': 1,
'OMP_NUM_THREADS': 1,
'CUDA_VISIBLE_DEVICES': cuda_visible_devices
}
env.update(executor.get('env', {}))
for k, v in env.items():
os.environ[k] = str(v)
self.info(f'Set env. {k} = {v}')
def dag_model_start(session: Session, data: dict):
provider = ModelProvider(session)
model = provider.by_id(data['model_id'])
dag_provider = DagProvider(session)
dag = dag_provider.by_id(data['dag'], joined_load=[Dag.project_rel])
project = dag.project_rel
src_config = Config.from_yaml(dag.config)
pipe = src_config['pipes'][data['pipe']['name']]
equations = yaml_load(model.equations)
versions = data['pipe']['versions']
if len(versions) > 0:
version = data['pipe']['version']
pipe_equations = yaml_load(version['equations'])
found_version = versions[0]
for v in versions:
if v['name'] == version['name']:
found_version = v
break
found_version['used'] = now()
if len(pipe) == 1:
pipe[list(pipe)[0]].update(pipe_equations)
else:
pipe.update(pipe_equations)
equations[data['pipe']['name']] = versions
model.equations = yaml_dump(equations)
for v in pipe.values():
v['model_id'] = model.id
v['model_name'] = model.name
config = {
'info': {
'name': data['pipe']['name'],
'project': project.name
},
'executors': pipe
}
if model.dag:
old_dag = dag_provider.by_id(model.dag)
if old_dag.name != dag.name:
model.dag = dag.id
else:
model.dag = dag.id
provider.commit()
dag_standard(session=session,
config=config,
debug=False,
upload_files=False,
copy_files_from=data['dag'])
def model_start_begin(self, model_id: int):
model = self.by_id(model_id)
models_dags = self.query(Dag). \
filter(Dag.type == DagType.Pipe.value). \
filter(Dag.project == model.project). \
order_by(Dag.id.desc()). \
all()
used_dag_names = set()
versions = yaml_load(model.equations)
res_dags = []
res_dag = None
for dag in models_dags:
if dag.name in used_dag_names:
continue
config = Config.from_yaml(dag.config)
d = {
'name': dag.name,
'id': dag.id,
'pipes': [{
'name': p
} for p in config['pipes']]
}
for pipe in d['pipes']:
pipe['versions'] = versions.get(pipe['name'], [])
used = [
v.get('used', datetime.datetime.min)
for v in pipe['versions']
]
pipe['used'] = datetime.datetime.min if len(
used) == 0 else max(used)
d['pipes'] = sorted(d['pipes'],
key=lambda x: x['used'],
reverse=True)
for p in d['pipes']:
del p['used']
for v in p['versions']:
if 'used' in v:
del v['used']
used_dag_names.add(dag.name)
res_dags.append(d)
if d['id'] == model.dag:
res_dag = d
return {'dags': res_dags, 'dag': res_dag, 'model_id': model_id}
def dag_model_start(session: Session, data: dict):
provider = ModelProvider(session)
model = provider.by_id(data['model_id'])
dag = DagProvider(session
).by_id(data['dag'], joined_load=[Dag.project_rel])
project = dag.project_rel
src_config = Config.from_yaml(dag.config)
pipe = src_config['pipes'][data['pipe']]
for k, v in pipe.items():
if v.get('slot') != data['slot']:
continue
params = yaml_load(data['interface_params'])
slot = {
'interface': data['interface'],
'interface_params': params,
'slot': k,
'name': model.name,
'id': data['model_id']
}
v['slot'] = slot
config = {
'info': {
'name': data['pipe'],
'project': project.name
},
'executors': pipe
}
dag_standard(
session=session,
config=config,
debug=False,
upload_files=False,
copy_files_from=data['dag']
)
model.dag = data['dag']
model.interface = data['interface']
model.interface_params = data['interface_params']
model.slot = data['slot']
provider.commit()
def create_base(self):
self.info('create_base')
if app.current_task:
app.current_task.update_state(state=states.SUCCESS)
app.control.revoke(app.current_task.request.id, terminate=True)
self.provider = TaskProvider(self.session)
self.library_provider = DagLibraryProvider(self.session)
self.storage = Storage(self.session)
self.task = self.provider.by_id(
self.id, joinedload(Task.dag_rel, innerjoin=True))
if not self.task:
raise Exception(f'task with id = {self.id} is not found')
self.dag = self.task.dag_rel
self.executor = None
self.hostname = socket.gethostname()
self.docker_img = DOCKER_IMG
self.worker_index = os.getenv('WORKER_INDEX', -1)
self.queue_personal = f'{self.hostname}_{self.docker_img}_' \
f'{self.worker_index}'
self.config = Config.from_yaml(self.dag.config)
self.executor_type = self.config['executors'][
self.task.executor]['type']
executor = self.config['executors'][self.task.executor]
env = {'MKL_NUM_THREADS': 1, 'OMP_NUM_THREADS': 1}
env.update(executor.get('env', {}))
for k, v in env.items():
os.environ[k] = str(v)
self.info(f'Set env. {k} = {v}')
def _from_config(cls, executor: dict, config: Config,
additional_info: dict):
output = os.path.join(config.data_folder, config.get('output', '.'))
return cls(output=output, competition=executor['competition'])
def get(self, filter, options: PaginatorOptions):
query = self.query(Model). \
options(joinedload(Model.dag_rel, innerjoin=True)). \
options(joinedload(Model.project_rel, innerjoin=True))
if filter.get('project'):
query = query.filter(Model.project == filter['project'])
if filter.get('name'):
query = query.filter(Model.name.like(f'%{filter["name"]}%'))
if filter.get('created_min'):
created_min = parse_time(filter['created_min'])
query = query.filter(Model.created >= created_min)
if filter.get('created_max'):
created_max = parse_time(filter['created_max'])
query = query.filter(Model.created <= created_max)
total = query.count()
paginator = self.paginator(query, options) if options else query
res = []
models = paginator.all()
models_projects = set()
for model in models:
row = self.to_dict(model, rules=('-project_rel.class_names', ))
res.append(row)
models_projects.add(model.project)
models_dags = self.query(Dag). \
filter(Dag.type == DagType.Pipe.value). \
filter(Dag.project.in_(list(models_projects))). \
order_by(Dag.id.desc()). \
all()
dags_by_project = defaultdict(list)
used_dag_names = set()
for dag in models_dags:
if dag.name in used_dag_names:
continue
config = Config.from_yaml(dag.config)
slots = []
for pipe in config['pipes'].values():
for k, v in pipe.items():
if 'slot' in v:
if v['slot'] not in slots:
slots.append(v['slot'])
elif 'slots' in v:
for slot in v['slots']:
if slot not in slots:
slots.append(slot)
d = {
'name': dag.name,
'id': dag.id,
'slots': slots,
'interfaces': list(config['interfaces']),
'pipes': list(config['pipes'])
}
dags_by_project[dag.project].append(d)
used_dag_names.add(dag.name)
for row in res:
row['dags'] = dags_by_project[row['project']]
projects = self.query(Project.name, Project.id). \
order_by(Project.id.desc()). \
limit(20). \
all()
projects = [{'name': name, 'id': id} for name, id in projects]
return {'total': total, 'data': res, 'projects': projects}
def get(self, filter: dict, options: PaginatorOptions):
query = self.query(Task, Project.name).\
join(Dag, Dag.id == Task.dag).\
join(Project, Project.id == Dag.project).\
options(joinedload(Task.dag_rel, innerjoin=True))
query = self._get_filter(query, filter)
total = query.count()
paginator = self.paginator(query, options)
res = []
for p, project_name in paginator.all():
if p.dag_rel is None:
continue
item = {**self.to_dict(p, rules=('-additional_info', ))}
item['status'] = to_snake(TaskStatus(item['status']).name)
item['type'] = to_snake(TaskType(item['type']).name)
item['dag_rel']['project'] = {
'id': item['dag_rel']['project'],
'name': project_name
}
if p.started is None:
delta = 0
elif p.status == TaskStatus.InProgress.value:
delta = (now() - p.started).total_seconds()
else:
finish = (p.finished or p.last_activity)
delta = (finish - p.started).total_seconds()
item['duration'] = duration_format(delta)
if p.dag_rel is not None:
res.append(item)
if filter.get('report'):
tasks_within_report = self.query(
ReportTasks.task
).filter(ReportTasks.report == int(filter['report']))
tasks_within_report = {t[0] for t in tasks_within_report}
for r in res:
r['report_full'] = r['id'] in tasks_within_report
projects = self.query(Project.name, Project.id). \
order_by(Project.id.desc()). \
limit(20). \
all()
dags = self.query(Dag.name, Dag.id). \
order_by(Dag.id.desc()). \
limit(20). \
all()
projects = [{'name': name, 'id': id} for name, id in projects]
dags = [{'name': name, 'id': id} for name, id in dags]
dags_model = self.query(Dag.name, Dag.id, Dag.config). \
filter(Dag.type == DagType.Pipe.value). \
order_by(Dag.id.desc()). \
all()
dags_model_dict = []
used_dag_names = set()
for name, id, config in dags_model:
if name in used_dag_names:
continue
config = Config.from_yaml(config)
slots = []
for pipe in config['pipes'].values():
for k, v in pipe.items():
if 'slot' in v:
slots.append(v['slot'])
elif 'slots' in v:
slots.extend(v['slots'])
dag = {
'name': name,
'id': id,
'slots': slots,
'interfaces': [
{
'name': k,
'params': yaml_dump(v)
} for k, v in config['interfaces'].items()
]
}
dags_model_dict.append(dag)
used_dag_names.add(name)
return {
'total': total,
'data': res,
'projects': projects,
'dags': dags,
'dags_model': dags_model_dict
}
