def test_age_on_date():
"""Test whether the age is determined correctly."""
bday = datetime(1994, 1, 26)
exp1 = datetime(2018, 1, 25)
exp2 = datetime(2018, 1, 26)
exp3 = datetime(2018, 1, 27)
exp4 = datetime(1990, 1, 1)
assert _age_on_date(bday, exp1) == 23
assert _age_on_date(bday, exp2) == 24
assert _age_on_date(bday, exp3) == 24
with pytest.raises(ValueError):
_age_on_date(bday, exp4)
def _participants_tsv(raw, subject_id, fname, overwrite=False,
verbose=True):
"""Create a participants.tsv file and save it.
This will append any new participant data to the current list if it
exists. Otherwise a new file will be created with the provided information.
Parameters
----------
raw : instance of Raw
The data as MNE-Python Raw object.
subject_id : str
The subject name in BIDS compatible format ('01', '02', etc.)
fname : str
Filename to save the participants.tsv to.
overwrite : bool
Whether to overwrite the existing file.
Defaults to False.
If there is already data for the given `subject_id` and overwrite is
False, an error will be raised.
verbose : bool
Set verbose output to true or false.
"""
subject_id = 'sub-' + subject_id
data = OrderedDict(participant_id=[subject_id])
subject_age = "n/a"
sex = "n/a"
subject_info = raw.info['subject_info']
if subject_info is not None:
sexes = {0: 'n/a', 1: 'M', 2: 'F'}
sex = sexes[subject_info.get('sex', 0)]
# determine the age of the participant
age = subject_info.get('birthday', None)
meas_date = raw.info.get('meas_date', None)
if isinstance(meas_date, (tuple, list, np.ndarray)):
meas_date = meas_date[0]
if meas_date is not None and age is not None:
bday = datetime(age[0], age[1], age[2])
meas_datetime = datetime.fromtimestamp(meas_date)
subject_age = _age_on_date(bday, meas_datetime)
else:
subject_age = "n/a"
data.update({'age': [subject_age], 'sex': [sex]})
if os.path.exists(fname):
orig_data = _from_tsv(fname)
# whether the new data exists identically in the previous data
exact_included = _contains_row(orig_data,
{'participant_id': subject_id,
'age': subject_age,
'sex': sex})
# whether the subject id is in the previous data
sid_included = subject_id in orig_data['participant_id']
# if the subject data provided is different to the currently existing
# data and overwrite is not True raise an error
if (sid_included and not exact_included) and not overwrite:
raise FileExistsError('"%s" already exists in the participant ' # noqa: E501 F821
'list. Please set overwrite to '
'True.' % subject_id)
# otherwise add the new data
data = _combine(orig_data, data, 'participant_id')
# overwrite is forced to True as all issues with overwrite == False have
# been handled by this point
_write_tsv(fname, data, True, verbose)
return fname
