from models import (
User,
DataStore,
)
user = User('*****@*****.**', 'weakpass')
ds = DataStore()
def test_default_attributes():
assert user.id is not None
assert user.created is not None
assert user.modified is not None
def test_user_create():
""" It should create a new user """
email = '*****@*****.**'
passw = 'lympass'
users = ds.storage.get('users')
if users is None:
len_before = 0
else:
len_before = len(users)
ds.create_user(first_name='Tom',
last_name='Riddle',
email=email,
password=passw)
len_after = ds.storage.get('users').__len__()
import pymongo
import time
from optparse import OptionParser
from models import DataStore
start_time = time.time()
parser = OptionParser()
parser.add_option("-s",
"--rsid",
dest="rsid",
help="rsid, eg rs7412",
metavar="STRING")
(options, args) = parser.parse_args()
connection = pymongo.MongoClient("mongodb://localhost")
db = connection.metadata
ds = DataStore(db, 'affy')
print "STUDY NAME", ds.get_studyname()
marker_data = ds.get_marker_summary_probs(options.rsid)
print marker_data["TOTALS"]
connection.close()
print "END:", time.time() - start_time, "seconds"
except:
push_result = bitcoin.blockr_pushtx(tx)
tx_total = sum(out.get('value') for out in outs)
# This address has been successfully spent from, update tx info and don't check it again.
address_info.spent = True
address_info.spending_tx = tx_hash
address_info.donation_amount = tx_total
# Keep a total of all bitcoins tipped
total_donated = DataStore.query.filter_by(
key='total_donated').first()
if total_donated:
total_donated.value = int(int(total_donated.value) + tx_total)
else:
total_donated = DataStore('total_donated', tx_total)
db.session.add(total_donated)
db.session.commit()
app.logger.info(
'Transaction successfully sent {} satoshi from {} in tx {}.'.
format(tx_total, address, tx_hash))
return {
'status': 'success',
'data': {
'message':
'<strong>Success!</strong> Your transaction was received and forwarded to your selected relays. '
'<a target="_blank" href="https://blockchain.info/tx/' +
tx_hash + '">' + tx_hash[0:10] + '..</a>',
'tx_hash':
tx_hash
# execution flow starts here
#
parser = OptionParser()
parser.add_option("-f",
"--filename",
dest="filename",
help="rsid file",
metavar="STR")
(options, args) = parser.parse_args()
connection = pymongo.MongoClient("mongodb://localhost")
db = connection.genomicsdb_test
#db = connection.gwas_metadata
ds = DataStore(db, "genomicsdb_test", "bpf", False)
start_time = time.time()
calls = ["0/0", "0/1", "1/1", "Missing"]
icalls = [0, 1, 2, -9]
def get_call(probs, threshold):
max_prob = 0.0
max_idx = 3
#print "Probs:", probs
for idx, prob in enumerate(probs):
if float(prob) > max_prob:
max_prob = float(prob)
max_idx = idx
from zipfile import ZIP_DEFLATED
from optparse import OptionParser
from models import DataStore
# execution flow starts here
#
parser = OptionParser()
parser.add_option("-r", "--rsid", dest="rsid", help="rsid id", metavar="STR")
(options, args) = parser.parse_args()
connection = pymongo.MongoClient("mongodb://localhost")
db = connection.genomicsdb_test
#db = connection.gwas_metadata
ds = DataStore(db, "genomicsdb_test", "akh", False)
start_time = time.time()
calls = ["0/0", "0/1", "1/1", "Missing"]
icalls = [0, 1, 2, -9]
def get_call(probs, threshold):
max_prob = 0.0
max_idx = 3
#print "Probs:", probs
for idx, prob in enumerate(probs):
if float(prob) > max_prob:
max_prob = float(prob)
max_idx = idx
import pymongo
import time
from zipfile import ZipFile
from zipfile import ZIP_DEFLATED
from optparse import OptionParser
from models import DataStore
# execution flow starts here
#
parser = OptionParser()
parser.add_option("-r", "--rsid", dest="rsid",
help="dbSNP rsid", metavar="STR")
parser.add_option("-p", "--prochi", dest="prochi",
help="prochi", metavar="STR")
(options, args) = parser.parse_args()
connection = pymongo.MongoClient("mongodb://localhost")
db = connection.gwas_metadata_2
#db = connection.gwas_metadata
ds = DataStore(db, 'akh')
start_time = time.time()
ds.get_rsid_prochi_data(options.rsid, options.prochi, 0.9, "csv_calls")
connection.close()
print "END:", time.time() - start_time, "seconds"