def test_convert(self):
mf = ModflowOutput(self.resource, config_file=self.wgs84_config_file, exe_name="mf2005", verbose=True)
assert mf is not None
output_file = os.path.join(self.output_path, "convert.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
def main(name_file, config_file, action, output=None, verbose=None):
if verbose is True:
logger.level = logging.DEBUG
else:
verbose = False
logger.level = logging.INFO
# Try to load files for immediate warnings back to the user
try:
with open(name_file) as f:
f.read()
except IOError:
logger.info("Error opening namefile: {!s}".format(name_file))
return
try:
with open(config_file) as f:
f.read()
except IOError:
logger.info("Error opening configuration file: {!s}".format(config_file))
return
if action not in ['plot', 'netcdf']:
logger.error("The 'action' paramter must be 'plot' or 'netcdf'")
return
mo = ModflowOutput(name_file, config_file=config_file)
if action == "plot":
mo.to_plot()
else:
action == "netcdf"
mo.to_netcdf(output)
return 0
def test_config_global_attributes(self):
mf = ModflowOutput(self.resource, config_file=self.wgs84_config_file, exe_name="mf2005", verbose=True)
assert mf is not None
output_file = os.path.join(self.output_path, "convert.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
self.assertEquals(nc.id, 'wgs84-config-test')
self.assertEquals(nc.creator, 'modflow2netcdf')
def test_convert(self):
mf = ModflowOutput(self.resource,
config_file=self.wgs84_config_file,
exe_name="mf2005",
verbose=True)
assert mf is not None
output_file = os.path.join(self.output_path, "convert.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
def test_freyberg_netcdf(self):
working_dir = os.path.join(self.output_path, "freyberg")
freyberg_nam = os.path.join(working_dir, "freyberg.nam")
freyberg_geo = os.path.join(working_dir, "freyberg.geo")
mf = ModflowOutput(freyberg_nam, config_file=freyberg_geo, exe_name="mf2005", verbose=True, model_ws=working_dir)
assert mf is not None
output_file = os.path.join(self.output_path, "freyberg", "freyberg.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get("time").units == "days since 1970-01-01T00:00:00Z"
def test_colorado_netcdf(self):
working_dir = os.path.join(self.output_path, "colorado")
colorado_nam = os.path.join(working_dir, "mod16_ssfix_wel2.nam")
colorado_geo = os.path.join(working_dir, "colorado.geo")
mf = ModflowOutput(colorado_nam, config_file=colorado_geo, exe_name="mf2005", verbose=True, model_ws=working_dir)
assert mf is not None
output_file = os.path.join(self.output_path, "colorado", "colorado.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get("time").units == "minutes since 1970-01-01T00:00:00Z"
def test_miami_dade_netcdf(self):
working_dir = os.path.join(self.output_path, "miami-dade")
miami_nam = os.path.join(working_dir, "UMD_fb.nam")
miami_geo = os.path.join(working_dir, "miami-dade.geo")
mf = ModflowOutput(miami_nam, config_file=miami_geo, exe_name="mf2005", verbose=True, model_ws=working_dir)
assert mf is not None
output_file = os.path.join(working_dir, "miami-dade.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get("time").units == "days since 1996-01-01T00:00:00Z"
def test_carolina_netcdf(self):
working_dir = os.path.join(self.output_path, "carolina")
carolina_nam = os.path.join(working_dir, "1-23-07_NOASP.nam")
carolina_geo = os.path.join(working_dir, "carolina.geo")
mf = ModflowOutput(carolina_nam, config_file=carolina_geo, exe_name="mf2005", verbose=True, model_ws=working_dir)
assert mf is not None
output_file = os.path.join(self.output_path, "carolina", "carolina.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get("time").units == "days since 1899-12-31T00:00:00Z"
def test_config_global_attributes(self):
mf = ModflowOutput(self.resource,
config_file=self.wgs84_config_file,
exe_name="mf2005",
verbose=True)
assert mf is not None
output_file = os.path.join(self.output_path, "convert.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
self.assertEquals(nc.id, 'wgs84-config-test')
self.assertEquals(nc.creator, 'modflow2netcdf')
def test_colorado_netcdf(self):
working_dir = os.path.join(self.output_path, "colorado")
colorado_nam = os.path.join(working_dir, "mod16_ssfix_wel2.nam")
colorado_geo = os.path.join(working_dir, "colorado.geo")
mf = ModflowOutput(colorado_nam,
config_file=colorado_geo,
exe_name="mf2005",
verbose=True,
model_ws=working_dir)
assert mf is not None
output_file = os.path.join(self.output_path, "colorado", "colorado.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get(
"time").units == "minutes since 1970-01-01T00:00:00Z"
def test_miami_dade_netcdf(self):
working_dir = os.path.join(self.output_path, "miami-dade")
miami_nam = os.path.join(working_dir, "UMD_fb.nam")
miami_geo = os.path.join(working_dir, "miami-dade.geo")
mf = ModflowOutput(miami_nam,
config_file=miami_geo,
exe_name="mf2005",
verbose=True,
model_ws=working_dir)
assert mf is not None
output_file = os.path.join(working_dir, "miami-dade.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get(
"time").units == "days since 1996-01-01T00:00:00Z"
def test_carolina_netcdf(self):
working_dir = os.path.join(self.output_path, "carolina")
carolina_nam = os.path.join(working_dir, "1-23-07_NOASP.nam")
carolina_geo = os.path.join(working_dir, "carolina.geo")
mf = ModflowOutput(carolina_nam,
config_file=carolina_geo,
exe_name="mf2005",
verbose=True,
model_ws=working_dir)
assert mf is not None
output_file = os.path.join(self.output_path, "carolina", "carolina.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get(
"time").units == "days since 1899-12-31T00:00:00Z"
def test_freyberg_netcdf(self):
working_dir = os.path.join(self.output_path, "freyberg")
freyberg_nam = os.path.join(working_dir, "freyberg.nam")
freyberg_geo = os.path.join(working_dir, "freyberg.geo")
mf = ModflowOutput(freyberg_nam,
config_file=freyberg_geo,
exe_name="mf2005",
verbose=True,
model_ws=working_dir)
assert mf is not None
output_file = os.path.join(self.output_path, "freyberg", "freyberg.nc")
mf.to_netcdf(output_file=output_file)
nc = netCDF4.Dataset(output_file)
assert nc is not None
assert nc.variables.get(
"time").units == "days since 1970-01-01T00:00:00Z"
def main(name_file, config_file, action, output=None, verbose=None):
if verbose is True:
logger.level = logging.DEBUG
else:
verbose = False
logger.level = logging.INFO
# Try to load files for immediate warnings back to the user
try:
with open(name_file) as f:
f.read()
except IOError:
logger.info("Error opening namefile: {!s}".format(name_file))
return
try:
with open(config_file) as f:
f.read()
except IOError:
logger.info(
"Error opening configuration file: {!s}".format(config_file))
return
if action not in ['plot', 'netcdf']:
logger.error("The 'action' paramter must be 'plot' or 'netcdf'")
return
mo = ModflowOutput(name_file, config_file=config_file)
if action == "plot":
mo.to_plot()
else:
action == "netcdf"
mo.to_netcdf(output)
return 0
#define the workspace
freyberg_ws = os.path.join('resources','freyberg')
# In[4]:
# Load MODFLOW output files
from modflow2netcdf.output import ModflowOutput
mf = ModflowOutput('freyberg.nam', config_file=freyberg_config, exe_name="mf2005", model_ws=freyberg_ws, verbose=True)
# In[5]:
# Save NetCDF output
freyberg_output = 'temp_freyberg_output.nc'
_ = mf.to_netcdf(output_file=freyberg_output)
# In[8]:
# Let's check out the NetCDF file we created
import numpy as np
import matplotlib
import matplotlib.cm as cm
import matplotlib.pyplot as plt
get_ipython().magic(u'matplotlib inline')
from mpl_toolkits.mplot3d.axes3d import Axes3D
# In[9]:
