def module_main(ctx):
try:
filename = a3.inputs['FileName'].path
#Inizialization
tstart = time.clock()
print(SEPARATOR)
print('Loading the following image: ', filename)
#Load and reshape image
img = ImageClass.load(filename)
#Print important image parameters
print_line_by_line(str(img))
#Create Output 1
ch_1_Nb = a3.inputs['Channel'] - 1
ch_1 = img.get_dimension(ch_1_Nb, 'C')
ch_1.metadata['Path'] = filename
ch_1.reorder('ZYXCT')
a3.outputs['Channel'] = ch_1
#Finalization
tstop = time.clock()
print('Processing finished in ' + str((tstop - tstart)) + ' seconds! ')
print('Image loaded successfully!')
print(SEPARATOR)
except Exception as e:
raise error("Error occured while executing '" + str(ctx.type()) +
"' module '" + str(ctx.name()) + "' !",
exception=e)
def module_threshold(image, method="Otsu", kwargs={}):
#Threshold image
output, logText = threshold(image, method, **kwargs)
#Print logText
print_line_by_line(logText)
return output
def module_threshold(image, method="Otsu", kwargs={}):
#Threshold image
output, logText = threshold(image, method, **kwargs)
print('Threshold value(s): ' + str(logText.split('\n')[-2].split(':')[-1]))
#Print logText
print_line_by_line(logText)
return output