-r --rerun_statistics Override to model_fit statistics lock [default: False]
'''
from docopt import docopt
from modules.spect_gen import spect_gen
from modules.view import view
from modules.model_fit import model_fit
from modules.predict import predict
from modules.utils import generate_config
from modules.init import init
# From the docstring, generate the arguments dictionary
arguments = docopt(__doc__, version='opensoundscape.py version 0.0.1')
# Get the default config variables
config = generate_config("config/opensoundscape.ini", arguments["--ini"])
# Initialize empty string for arguments['<image>'] (not supported by docopt)
if not arguments['<image>']:
arguments['<image>'] = ''
if arguments['spect_gen']:
# Pass the configuration to spect_gen
spect_gen(config)
elif arguments['view']:
# Preprocess the file with the defaults
# -> optionally write image to a file
view(arguments['<label>'], arguments['<image>'], arguments['--segments'],
config)
# Need some functions from our module
import sys
script_dir = sys.path[0]
sys.path.insert(0, f"{script_dir}/..")
from modules.utils import generate_config, return_cpu_count
from modules.db_utils import cursor_item_to_stats
from modules.db_utils import return_cursor
# From the docstring, generate the arguments dictionary
arguments = docopt(__doc__,
version='find_important_templates.py version 0.0.1')
# Generate the config instance
config = generate_config('config/opensoundscape.ini', arguments['--ini'])
# Generate list of files which identify <label>
labels_df = pd.read_csv(
f"{config['general']['data_dir']}/{config['general']['train_file']}",
index_col="Filename")
labels_df = labels_df.fillna(0).astype(int)
# Downsample to particular species
species = arguments["<label>"]
# Identify files with and without bird
species_found = labels_df[species][labels_df[species] == 1]
species_not_found = labels_df[species][labels_df[species] == 0]
# Generate list of tuples with identifying features for templates
def ini_test_change():
return generate_config('../config/opensoundscape.ini',
'ini_test_change.ini')