def index():
"""List all cases."""
for_analysis = request.args.get('analyze') == 'on'
per_page = current_app.config['ITEMS_PER_PAGE']
page = int(request.args.get('page', 1))
if for_analysis:
case_q = db.to_analyze()
else:
case_q = db.cases()
page = case_q.paginate(page, per_page=per_page)
return render_template('cases/index.html', page=page,
for_analysis=for_analysis)
def dashboard():
"""Show details for a case."""
tot_samples = db.samples().count()
sequenced = db.samples(sequenced=True).count()
delivered = db.samples(delivered=True).count()
invoiced = db.samples(invoiced=True).count()
archived = db.samples(archived=True).count()
genotyped = db.samples(genotyped=True).count()
percents = dict(
sequenced=(sequenced / tot_samples * 100),
delivered=(delivered / tot_samples * 100),
invoiced=(invoiced / tot_samples * 100),
archived=(archived / tot_samples * 100),
genotyped=(genotyped / tot_samples * 100),
)
failed = db.samples(maf_fail=True)
to_rerun = db.cases(rerun=True)
to_research = db.cases(research=True)
return render_template('dashboard.html', samples=tot_samples,
percents=percents, failed=failed, reruns=to_rerun,
research=to_research)