'TBS': TBS, 'TestPlas': TestPlas, 'Fino_Pre': Fino_Pre, 'Fino_Post': Fino_Post, 'Shen_Pre': Shen_Pre, 'Shen_Post': Shen_Post, 'Pawlak_and_Kerr_1_AP_Post': Pawlak_and_Kerr_1_AP_Post, 'Pawlak_and_Kerr_1_AP_Pre': Pawlak_and_Kerr_1_AP_Pre, 'Pawlak_and_Kerr_Post': Pawlak_and_Kerr_Post, 'Pawlak_and_Kerr_Pre': Pawlak_and_Kerr_Pre, 'Kerr_and_Plenz': Kerr_and_Plenz, 'AP_1': AP_1, 'PSP_1': PSP_1, 'PSP_20_Hz': PSP_20_Hz, 'PSP_100_Hz': PSP_100_Hz } location = StimLocParams(which_spines='all', spine_density=0.2, pulse_sequence=None, stim_dendrites=['tertdend1_1' ]) # Add probability of stimulation. # What about Shindou? Above are all the GABA blocking ones; Shindou didn't block GABA # Only saw LTD in first paper; but look at latest paper Stimulation = StimParams(Paradigm=PSP_1, stim_delay=0.02, StimLoc=location) #pulse sequence should be of the form: #{1:[0,1],2:[2,3],3:[0,1]} -- for each pulse specify a list of spines to stimulate
'PSP_1': PSP_1, 'PSP_1Hz': PSP_1Hz, 'PSP_5Hz': PSP_5Hz, 'PSP_10Hz': PSP_10Hz, 'PSP_20Hz': PSP_20Hz, 'PSP_40Hz': PSP_40Hz, 'PSP_100Hz': PSP_100Hz } # stim_dendrite list must correspond to dendrites in morphology.p # spine_density units: fraction of spines connected in specified compartments # if zero, will connect directly to dendrite, but must specify syntype location = {} location['str'] = StimLocParams(which_spines='all', spine_density=0.0, pulse_sequence=None, stim_dendrites=['p0b1b1b2'], syntype='gaba') location['GPe'] = StimLocParams(which_spines='all', spine_density=0.0, pulse_sequence=None, stim_dendrites=['p0b1'], syntype='gaba', weight=2) # stim_delay units: sec Stimulation = StimParams(Paradigm=PSP_100Hz, stim_delay=0, StimLoc=location['GPe']) # pulse sequence should be of the form:
n_pulse=0, A_inject=0.25e-9, f_burst=1, n_burst=1, f_train=1, n_train=1, width_AP=0.005, AP_interval=0.01, n_AP=0, ISI=0, name="inject") #This list is required to assign different stim paradigms if specified by the arg_parser paradigm_dict = { 'inject': inject, 'TestPlas': TestPlas, 'AP_1': AP_1, 'PSP_1': PSP_1 } #stim_dendrite list must correspond to dendrites in morphology.p location = StimLocParams(which_spines='all', spine_density=0.2, pulse_sequence=None, stim_dendrites=['p1b1b1']) Stimulation = StimParams(Paradigm=inject, stim_delay=0.02, StimLoc=location) #pulse sequence should be of the form: #{1:[0,1],2:[2,3],3:[0,1]} -- for each pulse specify a list of spines to stimulate