'TBS': TBS,
'TestPlas': TestPlas,
'Fino_Pre': Fino_Pre,
'Fino_Post': Fino_Post,
'Shen_Pre': Shen_Pre,
'Shen_Post': Shen_Post,
'Pawlak_and_Kerr_1_AP_Post': Pawlak_and_Kerr_1_AP_Post,
'Pawlak_and_Kerr_1_AP_Pre': Pawlak_and_Kerr_1_AP_Pre,
'Pawlak_and_Kerr_Post': Pawlak_and_Kerr_Post,
'Pawlak_and_Kerr_Pre': Pawlak_and_Kerr_Pre,
'Kerr_and_Plenz': Kerr_and_Plenz,
'AP_1': AP_1,
'PSP_1': PSP_1,
'PSP_20_Hz': PSP_20_Hz,
'PSP_100_Hz': PSP_100_Hz
}
location = StimLocParams(which_spines='all',
spine_density=0.2,
pulse_sequence=None,
stim_dendrites=['tertdend1_1'
]) # Add probability of stimulation.
# What about Shindou? Above are all the GABA blocking ones; Shindou didn't block GABA
# Only saw LTD in first paper; but look at latest paper
Stimulation = StimParams(Paradigm=PSP_1, stim_delay=0.02, StimLoc=location)
#pulse sequence should be of the form:
#{1:[0,1],2:[2,3],3:[0,1]} -- for each pulse specify a list of spines to stimulate
'PSP_5Hz': PSP_5Hz,
'PSP_10Hz': PSP_10Hz,
'PSP_20Hz': PSP_20Hz,
'PSP_40Hz': PSP_40Hz,
'PSP_100Hz': PSP_100Hz
}
# stim_dendrite list must correspond to dendrites in morphology.p
# spine_density units: fraction of spines connected in specified compartments
# if zero, will connect directly to dendrite, but must specify syntype
location = {}
location['str'] = StimLocParams(which_spines='all',
spine_density=0.0,
pulse_sequence=None,
stim_dendrites=['p0b1b1b2'],
syntype='gaba')
location['GPe'] = StimLocParams(which_spines='all',
spine_density=0.0,
pulse_sequence=None,
stim_dendrites=['p0b1'],
syntype='gaba',
weight=2)
# stim_delay units: sec
Stimulation = StimParams(Paradigm=PSP_100Hz,
stim_delay=0,
StimLoc=location['GPe'])
# pulse sequence should be of the form:
# {1:[0,1],2:[2,3],3:[0,1]} -- for each pulse specify a list of spines to stimulate
n_pulse=0,
A_inject=0.25e-9,
f_burst=1,
n_burst=1,
f_train=1,
n_train=1,
width_AP=0.005,
AP_interval=0.01,
n_AP=0,
ISI=0,
name="inject")
#This list is required to assign different stim paradigms if specified by the arg_parser
paradigm_dict = {
'inject': inject,
'TestPlas': TestPlas,
'AP_1': AP_1,
'PSP_1': PSP_1
}
#stim_dendrite list must correspond to dendrites in morphology.p
location = StimLocParams(which_spines='all',
spine_density=0.2,
pulse_sequence=None,
stim_dendrites=['p1b1b1'])
Stimulation = StimParams(Paradigm=inject, stim_delay=0.02, StimLoc=location)
#pulse sequence should be of the form:
#{1:[0,1],2:[2,3],3:[0,1]} -- for each pulse specify a list of spines to stimulate