def test_add_infiles(self):
t = MQParam(TEMPLATE_PATH)
t.add_infiles([('/path/Test1.mzXML', '/path/Test2.mzXML'),
('/path/Test3.mzXML', '/path/Test4.mzXML')])
assert [e.text for e in t._root.find('filePaths')] == ['/path/Test1.mzXML',
'/path/Test2.mzXML',
'/path/Test3.mzXML',
'/path/Test4.mzXML']
assert [e.text for e in t._root.find('paramGroupIndices')] == ['0', '0', '1', '1']
assert t[1]
def test_translate(self):
t = MQParam(TEMPLATE_PATH)
t.add_infiles([('/posix/path/to/Test1.mzXML',
'/posix/path/to/Test2.mzXML'),
('/path/dummy.mzXML',)]) # mqparam is not designed for windows
t._root.find('filePaths')[2].text = r'D:\Windows\Path\Test3.mzXML'
t.translate(('/galaxy/working/Test3.mzXML',
'/galaxy/working/Test1.mzXML',
'/galaxy/working/Test2.mzXML',
'/galaxy/working/Test4.mzXML'))
assert [e.text for e in t._root.find('filePaths')] == ['/galaxy/working/Test1.mzXML',
'/galaxy/working/Test2.mzXML',
'/galaxy/working/Test3.mzXML']