def test(self):
args, metric = Assign.parser.parse_args([
'-p', get('ProjectInfo.yaml', just_filename=True),
'-g', get('Gens.lh5', just_filename=True),
'-o', self.td,
'rmsd', '-a', get('AtomIndices.dat', just_filename=True)],
print_banner=False)
Assign.main(args, metric)
eq(load(pjoin(self.td, 'Assignments.h5')),
get('assign/Assignments.h5'))
eq(load(pjoin(self.td, 'Assignments.h5.distances')),
get('assign/Assignments.h5.distances'))
def test(self):
args, metric = Assign.parser.parse_args([
'-p', get('ProjectInfo.yaml', just_filename=True),
'-g', get('Gens.lh5', just_filename=True),
'-o', self.td,
'rmsd', '-a', get('OldAtomIndices.dat', just_filename=True)],
print_banner=False)
if os.getenv('TRAVIS', None) == 'true':
raise nose.SkipTest('Skipping test_Assign on TRAVIS')
Assign.main(args, metric)
eq(load(pjoin(self.td, 'Assignments.h5')),
get('assign/Assignments.h5'))
eq(load(pjoin(self.td, 'Assignments.h5.distances')),
get('assign/Assignments.h5.distances'), decimal=5)