def test_get_all_timesteps():
r = nc_particles.Reader('sample.nc')
data = r.get_all_timesteps(variables=['depth', 'mass', 'id'])
print(data)
assert 'depth' in data
assert 'mass' in data
assert 'id' in data
def test_init():
"""
Can the classes be intitialized?
"""
w = nc_particles.Writer('junk_file.nc')
del w
print(os.getcwd())
r = nc_particles.Reader('sample.nc')
def test_read_variables():
"""
does it find the data variables ?
"""
r = nc_particles.Reader('sample.nc')
# set(), because order doesn't matter
varnames = set(r.variables)
assert varnames == set(['latitude', 'depth', 'mass', 'id', 'longitude'])
def test_read_required():
"""
Does it find the required variables and attributes
Should be able to set up data_index
"""
r = nc_particles.Reader('sample.nc')
assert len(r.times) == 3
assert np.array_equal(r.data_index, np.array([0, 3, 7, 9]))
def test_get_attributes():
r = nc_particles.Reader('sample.nc')
assert r.get_attributes('depth') == {
'units': "meters",
'long_name': "particle depth below sea surface",
'standard_name': "depth",
'axis': "z positive down",
}
def test_get_timestep():
r = nc_particles.Reader('sample.nc')
data = r.get_timestep(
2, variables=['latitude', 'depth', 'mass', 'id', 'longitude'])
# specific results from the sample file
assert np.array_equal(data['longitude'], [-88.3, -88.1])
assert np.array_equal(data['latitude'], [28.1, 28.0])
assert np.array_equal(data['depth'], [0.0, 0.1])
assert np.array_equal(data['mass'], [0.05, 0.06])
assert np.array_equal(data['id'], [1, 3])
def test_get_units():
r = nc_particles.Reader('sample.nc')
assert r.get_units('depth') == 'meters'
assert r.get_units('longitude') == 'degrees_east'
def test_get_individual_trajectory():
r = nc_particles.Reader('sample.nc')
path = r.get_individual_trajectory(1)
assert np.array_equal(path['latitude'], [28.0, 28.05, 28.1])
assert np.array_equal(path['longitude'], [-88.1, -88.2, -88.3])
def test_str():
r = nc_particles.Reader('sample.nc')
print(r)
r.close()
assert True
def test_read_existing_dataset():
nc = netCDF4.Dataset('sample.nc')
r = nc_particles.Reader(nc)
assert len(r.times) == 3
