sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils")
import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here
projFile = File(os.getcwd(), "../Thalamocortical.ncx")
simConfigs = []
#simConfigs.append("TestNML2")
simConfigs.append("Default Simulation Configuration")
if len(sys.argv)==2 and sys.argv[1] == "-v1":
print("Generating NeuroML v1.8.1 files...")
nc.generateNeuroML1(projFile, simConfigs)
else:
nc.generateNeuroML2(projFile, simConfigs)
# Some extra files have been committed for testing or to provide other LEMS/NeuroML 2 examples
# This just pulls them from the repository, since they get wiped by the generateNeuroML2 function
extra_files = ['.test.*',
'channel_summary',
'updateNML2.sh',
'LEMS_SomaTest.xml',
'Test.net.nml',
'analyse_chans.sh',
'*.synapse.nml',
'L*.cell.nml',
quit()
sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils")
import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here
projFile = File(os.getcwd(), "../PyloricPacemakerNetwork.ncx")
simConfigs = []
simConfigs.append("Default Simulation Configuration")
if len(sys.argv)==2 and sys.argv[1] == "-v1":
print("Generating NeuroML v1.8.1 files...")
nc.generateNeuroML1(projFile, simConfigs)
else:
nc.generateNeuroML2(projFile, simConfigs)
extra_files = ['.test.*']
if len(sys.argv)==2 and sys.argv[1] == "-f":
extra_files.append('LEMS_PyloricPacemakerNetwork.xml')
extra_files.append('PyloricPacemakerNetwork.net.nml')
from subprocess import call
for f in extra_files:
call(["git", "checkout", "../generatedNeuroML2/%s"%f])
quit()
try:
from java.io import File
except ImportError:
print "Note: this file should be run using 'nC.bat -python XXX.py' or 'nC.sh -python XXX.py'"
print "which use Jython (and so can access the Java classes in nC), as opposed to standard C based Python"
print "See http://www.neuroconstruct.org/docs/python.html for more details"
quit()
sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils")
import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here
projFile = File(os.getcwd(), "../SolinasEtAl-GolgiCell.ncx")
print("Generating NeuroML v1.8.1 files...")
nc.generateNeuroML1(projFile, ['Fig. 2A: Pacemaking'])
print("Generating NeuroML v2 files...")
nc.generateNeuroML2(projFile, ['Fig. 2A: Pacemaking'])
# Some extra files have been committed for testing or to provide other LEMS/NeuroML 2 examples
# This just pulls them from the repository, since they get wiped by the generateNeuroML2 function
extra_files = ['.test.*', 'channel_summary', 'analyse_chans.sh', 'compare_nml2_mods.py', '../generatedNeuroML/.test.validate.omt']
if len(sys.argv)==2 and sys.argv[1] == "-f":
extra_files.append('SolinasEtAl-GolgiCell.net.nml')
from subprocess import call
for f in extra_files:
call(["git", "checkout", "../generatedNeuroML2/%s"%f])
