def get_map_file_template(data_type):
"""get_map_file_template
:param data_type:
"""
if data_type == "SE":
key = "fastq_single_end_mapping_template_qiime.xlsx"
elif data_type == "WGS_PE":
key = "WGS_bioBakery_template_N2.xlsx"
elif data_type == "WGS_SE":
key = "WGS_bioBakery_template_single_end_N2.xlsx"
elif data_type == "QC_PE":
key = "QC_pipeline_template_paired_end_N2.xlsx"
elif data_type == "QC_SE":
key = "QC_pipeline_template_single_end_N2.xlsx"
else:
# default, in case data_type is None
# will also be used for PE
key = "Demultiplexed_QIIME_mothur_DADA2_template.xlsx"
return s3utils.get_presigned_url(tfvars.RESOURCES_BUCKET_ID, key)
def get_results_url(self):
"""get_results_url
returns a signed URL for results"""
return s3utils.get_presigned_url(self.bucket, self._s3_results)
def get_logfile_url(self):
"""get_logfile_url
returns a signed URL for logfile"""
return s3utils.get_presigned_url(self.bucket, self._s3_log)
def get_test_files(filepath):
"""get_test_files
:param filepath:
"""
return s3utils.get_presigned_url(tfvars.TESTDATA_BUCKET_ID, filepath)
def get_resource_files(filename):
"""get_resource_files
:param filename:
"""
return s3utils.get_presigned_url(tfvars.RESOURCES_BUCKET_ID, filename)