def generate(namespace):
"""Run `neurodocker generate`."""
specs = utils._namespace_to_specs(namespace)
df = Dockerfile(specs)
if not namespace.no_print_df:
print(df.cmd)
if namespace.output:
df.save(filepath=namespace.output)
'conda_install':
'python=3.6 numpy scipy pandas jupyter scikit-learn matplotlib pytest scikit-image',
'pip_install': 'nipype nibabel nilearn nitime nipy'
}), ('ants', {
'version': '2.2.0'
}),
('freesurfer', {
'version': '6.0.0',
'license_path': 'license.txt',
'min': True
}), ('fsl', {
'version': '5.0.10',
'use_binaries': True
}),
('neurodebian', {
'os_codename': 'zesty',
'download_server': 'usa-nh',
'pkgs': ['afni', 'dcm2niix']
}), ('spm', {
'version': '12',
'matlab_version': 'R2017a'
})]
}
return specs
if __name__ == '__main__':
df = Dockerfile(set_specs())
df.save('Dockerfile')
print(df)