percent = 5
net = Network(
id="BBP_%spercent" % percent,
notes=
"A network with the Blue Brain Project connectivity data (%s% of total cells)",
)
default_cell = Cell(id="hhcell",
neuroml2_source_file="test_files/hhcell.cell.nml")
net.network_reader = NetworkReader(
type="BBPConnectomeReader",
parameters={
"id": net.id,
"filename": "test_files/cons_locs_pathways_mc0_Column.h5",
"percentage_cells_per_pop": percent,
"DEFAULT_CELL_ID": default_cell.id,
"cell_info": {
default_cell.id: default_cell
},
},
)
net.cells.append(default_cell)
net.synapses.append(
Synapse(id="ampa", neuroml2_source_file="test_files/ampa.synapse.nml"))
net.synapses.append(
Synapse(id="gaba", neuroml2_source_file="test_files/gaba.synapse.nml"))
input_source = InputSource(id="poissonFiringSyn",
neuroml2_source_file="test_files/inputs.nml")
net.input_sources.append(input_source)
from neuromllite import Network, Cell, Synapse, NetworkReader, InputSource, Input
from neuromllite.NetworkGenerator import generate_neuroml2_from_network
import sys
################################################################################
### Build new network
percent = 5
net = Network(id='BBP_%spercent'%percent, notes = 'A network with the Blue Brain Project connectivity data (%s% of total cells)')
default_cell = Cell(id='hhcell', neuroml2_source_file='test_files/hhcell.cell.nml')
net.network_reader = NetworkReader(type='BBPConnectomeReader',
parameters={'id':net.id,
'filename':'test_files/cons_locs_pathways_mc0_Column.h5',
'percentage_cells_per_pop':percent,
'DEFAULT_CELL_ID':default_cell.id,
'cell_info':{default_cell.id:default_cell}})
net.cells.append(default_cell)
net.synapses.append(Synapse(id='ampa', neuroml2_source_file='test_files/ampa.synapse.nml'))
net.synapses.append(Synapse(id='gaba', neuroml2_source_file='test_files/gaba.synapse.nml'))
input_source = InputSource(id='poissonFiringSyn', neuroml2_source_file='test_files/inputs.nml')
net.input_sources.append(input_source)
for pop in ['L4_PC']:
net.inputs.append(Input(id='stim_%s'%pop,
input_source=input_source.id,
population=pop,