def make_filter_box(self):
filter_box = QtWidgets.QWidget()
layout = QtWidgets.QGridLayout()
layout.setSpacing(10)
prefix_label = QtWidgets.QLabel('File Prefix')
self.prefix_box = QtWidgets.QLineEdit()
self.prefix_box.editingFinished.connect(self.set_range)
extension_label = QtWidgets.QLabel('File Extension')
self.extension_box = QtWidgets.QLineEdit()
self.extension_box.editingFinished.connect(self.set_extension)
suffix_label = QtWidgets.QLabel('File Suffix')
self.suffix_box = QtWidgets.QLineEdit('')
self.suffix_box.editingFinished.connect(self.get_prefixes)
layout.addWidget(prefix_label, 0, 0)
layout.addWidget(self.prefix_box, 0, 1)
layout.addWidget(extension_label, 0, 2)
layout.addWidget(self.extension_box, 0, 3)
layout.addWidget(suffix_label, 0, 4)
layout.addWidget(self.suffix_box, 0, 5)
self.prefix_combo = QtWidgets.QComboBox()
self.prefix_combo.setSizeAdjustPolicy(
QtWidgets.QComboBox.AdjustToContents)
self.prefix_combo.activated.connect(self.choose_prefix)
self.extension_combo = QtWidgets.QComboBox()
self.extension_combo.setSizeAdjustPolicy(
QtWidgets.QComboBox.AdjustToContents)
self.extension_combo.activated.connect(self.choose_extension)
layout.addWidget(self.prefix_combo, 1, 1, alignment=QtCore.Qt.AlignHCenter)
layout.addWidget(self.extension_combo, 1, 3, alignment=QtCore.Qt.AlignHCenter)
filter_box.setLayout(layout)
filter_box.setVisible(False)
return filter_box
def add_grid_headers(self):
self.header_grid = QtWidgets.QGridLayout()
self.header_widget = NXWidget()
self.header_widget.set_layout(self.header_grid)
row = 0
columns = [
'Scan', 'data', 'link', 'copy', 'max', 'find', 'refine', 'prepare',
'transform', 'masked_transform', 'combine', 'masked_combine',
'pdf', 'masked_pdf', 'overwrite', 'sync'
]
header = {}
for col, column in enumerate(columns):
header[column] = NXLabel(column,
bold=True,
width=75,
align='center')
if column == 'transform' or column == 'combine' or column == 'pdf':
self.header_grid.addWidget(header[column], row, col, 1, 2,
QtCore.Qt.AlignHCenter)
elif 'masked' not in column:
self.header_grid.addWidget(header[column], row, col)
header[column].setAlignment(QtCore.Qt.AlignHCenter)
row = 1
columns = 3 * ['regular', 'masked']
for col, column in enumerate(columns):
header[column] = NXLabel(column, width=75, align='center')
self.header_grid.addWidget(header[column], row, col + 8)
self.header_grid.setSpacing(0)
self.header_widget.setFixedHeight(60)
self.insert_layout(2, self.header_widget)
def __init__(self, parent=None):
super(TransformDialog, self).__init__(parent)
self.select_entry(self.initialize_grid)
self.refine = NXRefine()
grid = QtWidgets.QGridLayout()
grid.setSpacing(10)
header_font = QtGui.QFont()
header_font.setBold(True)
start_label = QtWidgets.QLabel('Start')
start_label.setFont(header_font)
grid.addWidget(start_label, 0, 1)
step_label = QtWidgets.QLabel('Step')
step_label.setFont(header_font)
grid.addWidget(step_label, 0, 2)
stop_label = QtWidgets.QLabel('Stop')
stop_label.setFont(header_font)
grid.addWidget(stop_label, 0, 3)
grid.addWidget(QtWidgets.QLabel('H:'), 1, 0)
grid.addWidget(QtWidgets.QLabel('K:'), 2, 0)
grid.addWidget(QtWidgets.QLabel('L:'), 3, 0)
self.start_h_box = QtWidgets.QLineEdit()
self.step_h_box = QtWidgets.QLineEdit()
self.stop_h_box = QtWidgets.QLineEdit()
grid.addWidget(self.start_h_box, 1, 1)
grid.addWidget(self.step_h_box, 1, 2)
grid.addWidget(self.stop_h_box, 1, 3)
self.start_k_box = QtWidgets.QLineEdit()
self.step_k_box = QtWidgets.QLineEdit()
self.stop_k_box = QtWidgets.QLineEdit()
grid.addWidget(self.start_k_box, 2, 1)
grid.addWidget(self.step_k_box, 2, 2)
grid.addWidget(self.stop_k_box, 2, 3)
self.start_l_box = QtWidgets.QLineEdit()
self.step_l_box = QtWidgets.QLineEdit()
self.stop_l_box = QtWidgets.QLineEdit()
grid.addWidget(self.start_l_box, 3, 1)
grid.addWidget(self.step_l_box, 3, 2)
grid.addWidget(self.stop_l_box, 3, 3)
self.set_layout(
self.entry_layout, grid,
self.checkboxes(
('copy', 'Copy to all entries', True),
('mask', 'Create masked transform group', True),
('overwrite', 'Overwrite existing transforms', False)),
self.close_buttons(save=True))
self.setWindowTitle('Transforming Data')
try:
self.initialize_grid()
except Exception:
pass
def __init__(self, parent=None):
super().__init__(parent)
self.select_entry(self.choose_entry)
self.Qgrid = QtWidgets.QGridLayout()
self.Qgrid.setSpacing(10)
headers = ['Axis', 'Q', 'dQ', 'N', 'Max']
width = [25, 50, 50, 25, 50]
column = 0
for header in headers:
label = NXLabel(header, bold=True, align='center')
self.Qgrid.addWidget(label, 0, column)
self.Qgrid.setColumnMinimumWidth(column, width[column])
column += 1
self.Qbox = {}
self.dQbox = {}
self.Nbox = {}
self.maxbox = {}
for i, label in enumerate(['H', 'K', 'L']):
self.Qgrid.addWidget(NXLabel(label, align='center'), i + 1, 0)
self.Qbox[label] = NXLineEdit(slot=self.calculate,
width=100,
align='right')
self.Qgrid.addWidget(self.Qbox[label], i + 1, 1)
self.dQbox[label] = NXLineEdit(slot=self.calculate,
width=100,
align='right')
self.Qgrid.addWidget(self.dQbox[label], i + 1, 2)
self.Nbox[label] = NXLabel(align='center')
self.Qgrid.addWidget(self.Nbox[label], i + 1, 3)
self.maxbox[label] = NXLabel(align='center')
self.Qgrid.addWidget(self.maxbox[label], i + 1, 4)
self.set_layout(self.entry_layout, self.close_buttons(save=True))
self.setWindowTitle('Transforming Data')
try:
self.initialize_grid()
except Exception:
pass
def update(self):
if not self.sample_directory:
raise NeXusError("No sample directory declared")
if self.grid:
self.delete_grid(self.grid)
del self.grid_widget
if self.scroll_area:
self.scroll_area.close()
self.scroll_area.deleteLater()
# Map from wrapper files to scan directories
wrapper_files = {
w: self.get_scan(w)
for w in sorted([
os.path.join(self.sample_directory, filename)
for filename in os.listdir(self.sample_directory)
if self.is_valid(filename)
],
key=natural_sort)
}
self.grid = QtWidgets.QGridLayout()
self.grid_widget = NXWidget()
self.grid_widget.set_layout(self.grid, 'stretch')
self.scroll_area = NXScrollArea(self.grid_widget)
self.scroll_area.setMinimumSize(1250, 300)
self.insert_layout(3, self.scroll_area)
self.grid.setSpacing(1)
self.scans = {}
self.scans_backup = {}
row = 0
# Create (unchecked) checkboxes
for wrapper_file, scan in wrapper_files.items():
scan_label = os.path.basename(scan)
status = {}
status['scan'] = NXLabel(scan_label)
if self.parent_file == wrapper_file:
status['scan'].setStyleSheet('font-weight:bold')
status['entries'] = []
status['data'] = self.new_checkbox()
status['link'] = self.new_checkbox()
status['copy'] = self.new_checkbox()
status['max'] = self.new_checkbox()
status['find'] = self.new_checkbox()
status['refine'] = self.new_checkbox()
status['prepare'] = self.new_checkbox()
status['transform'] = self.new_checkbox()
status['masked_transform'] = self.new_checkbox()
status['combine'] = self.new_checkbox()
status['masked_combine'] = self.new_checkbox()
status['pdf'] = self.new_checkbox()
status['masked_pdf'] = self.new_checkbox()
status['overwrite'] = self.new_checkbox(self.select_scans)
status['sync'] = self.new_checkbox()
self.grid.addWidget(status['scan'], row, 0, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['data'], row, 1, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['link'], row, 2, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['copy'], row, 3, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['max'], row, 4, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['find'], row, 5, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['refine'], row, 6,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['prepare'], row, 7,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['transform'], row, 8,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_transform'], row, 9,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['combine'], row, 10,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_combine'], row, 11,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['pdf'], row, 12, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_pdf'], row, 13,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['overwrite'], row, 14,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['sync'], row, 15, QtCore.Qt.AlignCenter)
self.scans[scan] = status
row += 1
self.grid.addWidget(NXLabel('All'), row, 0, QtCore.Qt.AlignCenter)
all_boxes = {}
all_boxes['link'] = self.new_checkbox(
lambda: self.select_status('link'))
all_boxes['copy'] = self.new_checkbox(
lambda: self.select_status('copy'))
all_boxes['max'] = self.new_checkbox(lambda: self.select_status('max'))
all_boxes['find'] = self.new_checkbox(
lambda: self.select_status('find'))
all_boxes['refine'] = self.new_checkbox(
lambda: self.select_status('refine'))
all_boxes['prepare'] = self.new_checkbox(
lambda: self.select_status('prepare'))
all_boxes['transform'] = self.new_checkbox(
lambda: self.select_status('transform'))
all_boxes['masked_transform'] = self.new_checkbox(
lambda: self.select_status('masked_transform'))
all_boxes['combine'] = self.new_checkbox(
lambda: self.select_status('combine'))
all_boxes['masked_combine'] = self.new_checkbox(
lambda: self.select_status('masked_combine'))
all_boxes['pdf'] = self.new_checkbox(lambda: self.select_status('pdf'))
all_boxes['masked_pdf'] = self.new_checkbox(
lambda: self.select_status('masked_pdf'))
all_boxes['overwrite'] = self.new_checkbox(self.select_all)
all_boxes['sync'] = self.new_checkbox(self.select_all)
self.grid.addWidget(all_boxes['link'], row, 2, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['copy'], row, 3, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['max'], row, 4, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['find'], row, 5, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['refine'], row, 6, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['prepare'], row, 7,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['transform'], row, 8,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_transform'], row, 9,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['combine'], row, 10,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_combine'], row, 11,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['pdf'], row, 12, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_pdf'], row, 13,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['overwrite'], row, 14,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['sync'], row, 15, QtCore.Qt.AlignCenter)
self.all_scans = all_boxes
self.start_progress((0, len(wrapper_files)))
# Populate the checkboxes based on the entries in self.db.File
for i, (wrapper, scan) in enumerate(wrapper_files.items()):
status = self.scans[scan]
status['data'].setEnabled(False)
f = self.db.get_file(wrapper)
status['entries'] = f.get_entries()
for task_name in self.db.task_names:
# Database columns use nx* names while columns don't
if task_name.startswith('nx'):
col_name = task_name[2:]
else:
col_name = task_name
checkbox = status[col_name]
file_status = getattr(f, task_name)
if file_status == self.db.DONE:
checkbox.setCheckState(QtCore.Qt.Checked)
checkbox.setEnabled(False)
elif file_status == self.db.IN_PROGRESS:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(True)
checkbox.setStyleSheet("color: green")
elif file_status == self.db.QUEUED:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(True)
checkbox.setStyleSheet("color: blue")
elif file_status == self.db.FAILED:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(True)
checkbox.setStyleSheet("color: red")
if status['data'].checkState() == QtCore.Qt.Unchecked:
for task in [
'link', 'max', 'find', 'prepare', 'transform',
'masked_transform'
]:
status[task].setEnabled(False)
self.update_progress(i)
self.stop_progress()
self.backup_scans()
return self.grid
def update(self):
if not self.sample_directory:
raise NeXusError("No sample directory declared")
if self.grid:
self.delete_grid(self.grid)
# Map from wrapper files to scan directories
wrapper_files = {
w: self.get_scan(w)
for w in sorted([
os.path.join(self.sample_directory, filename)
for filename in os.listdir(self.sample_directory)
if self.is_valid(filename)
],
key=natural_sort)
}
self.grid = QtWidgets.QGridLayout()
self.insert_layout(2, self.grid)
self.grid.setSpacing(1)
row = 0
columns = [
'Scan', 'data', 'link', 'max', 'find', 'copy', 'refine',
'transform', 'masked_transform', 'combine', 'masked_combine',
'pdf', 'overwrite', 'reduce', 'sync'
]
header = {}
for col, column in enumerate(columns):
header[column] = QtWidgets.QLabel(column)
header[column].setFont(self.bold_font)
header[column].setFixedWidth(75)
if column == 'transform' or column == 'combine':
self.grid.addWidget(header[column], row, col, 1, 2,
QtCore.Qt.AlignHCenter)
elif 'masked' not in column:
self.grid.addWidget(header[column], row, col)
header[column].setAlignment(QtCore.Qt.AlignHCenter)
row = 1
columns = ['regular', 'masked', 'regular', 'masked']
for col, column in enumerate(columns):
header[column] = QtWidgets.QLabel(column)
header[column].setFixedWidth(75)
header[column].setAlignment(QtCore.Qt.AlignHCenter)
self.grid.addWidget(header[column], row, col + 7)
self.scans = {}
self.scans_backup = {}
# Create (unchecked) checkboxes
for wrapper_file, scan in wrapper_files.items():
scan_label = os.path.basename(scan)
row += 1
status = {}
status['scan'] = QtWidgets.QLabel(scan_label)
if self.parent_file == wrapper_file:
status['scan'].setStyleSheet('font-weight:bold')
status['data'] = self.new_checkbox()
status['link'] = self.new_checkbox()
status['max'] = self.new_checkbox()
status['find'] = self.new_checkbox()
status['copy'] = self.new_checkbox()
status['refine'] = self.new_checkbox()
status['transform'] = self.new_checkbox()
status['masked_transform'] = self.new_checkbox()
status['combine'] = self.new_checkbox()
status['masked_combine'] = self.new_checkbox()
status['pdf'] = self.new_checkbox()
status['overwrite'] = self.new_checkbox(self.select_scans)
status['reduce'] = self.new_checkbox(self.select_scans)
status['sync'] = self.new_checkbox()
self.grid.addWidget(status['scan'], row, 0, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['data'], row, 1, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['link'], row, 2, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['max'], row, 3, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['find'], row, 4, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['copy'], row, 5, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['refine'], row, 6,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['transform'], row, 7,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_transform'], row, 8,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['combine'], row, 9,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['masked_combine'], row, 10,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['pdf'], row, 11, QtCore.Qt.AlignCenter)
self.grid.addWidget(status['overwrite'], row, 12,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['reduce'], row, 13,
QtCore.Qt.AlignCenter)
self.grid.addWidget(status['sync'], row, 14, QtCore.Qt.AlignCenter)
self.scans[scan] = status
row += 1
self.grid.addWidget(QtWidgets.QLabel('All'), row, 0,
QtCore.Qt.AlignCenter)
all_boxes = {}
all_boxes['link'] = self.new_checkbox(
lambda: self.select_status('link'))
all_boxes['max'] = self.new_checkbox(lambda: self.select_status('max'))
all_boxes['find'] = self.new_checkbox(
lambda: self.select_status('find'))
all_boxes['copy'] = self.new_checkbox(
lambda: self.select_status('copy'))
all_boxes['refine'] = self.new_checkbox(
lambda: self.select_status('refine'))
all_boxes['transform'] = self.new_checkbox(
lambda: self.select_status('transform'))
all_boxes['masked_transform'] = self.new_checkbox(
lambda: self.select_status('masked_transform'))
all_boxes['combine'] = self.new_checkbox(
lambda: self.select_status('combine'))
all_boxes['masked_combine'] = self.new_checkbox(
lambda: self.select_status('masked_combine'))
all_boxes['pdf'] = self.new_checkbox(lambda: self.select_status('pdf'))
all_boxes['overwrite'] = self.new_checkbox(self.select_all)
all_boxes['reduce'] = self.new_checkbox(self.select_all)
all_boxes['sync'] = self.new_checkbox(self.select_all)
self.grid.addWidget(all_boxes['link'], row, 2, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['max'], row, 3, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['find'], row, 4, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['copy'], row, 5, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['refine'], row, 6, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['transform'], row, 7,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_transform'], row, 8,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['combine'], row, 9,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['masked_combine'], row, 10,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['pdf'], row, 11, QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['overwrite'], row, 12,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['reduce'], row, 13,
QtCore.Qt.AlignCenter)
self.grid.addWidget(all_boxes['sync'], row, 14, QtCore.Qt.AlignCenter)
self.all_scans = all_boxes
self.start_progress((0, len(wrapper_files)))
# Populate the checkboxes based on the entries in nxdb.File
for i, (wrapper, scan) in enumerate(wrapper_files.items()):
status = self.scans[scan]
status['data'].setEnabled(False)
f = nxdb.get_file(wrapper)
for task_name in nxdb.task_names:
# Database columns use nx* names while columns don't
if task_name.startswith('nx'):
col_name = task_name[2:]
else:
col_name = task_name
checkbox = status[col_name]
file_status = getattr(f, task_name)
if file_status == nxdb.DONE:
checkbox.setCheckState(QtCore.Qt.Checked)
checkbox.setEnabled(False)
elif file_status == nxdb.IN_PROGRESS:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(True)
elif file_status == nxdb.QUEUED:
checkbox.setCheckState(QtCore.Qt.PartiallyChecked)
checkbox.setEnabled(False)
elif file_status == nxdb.FAILED:
checkbox.setCheckState(QtCore.Qt.Unchecked)
checkbox.setEnabled(True)
# TODO: do i need to account for last?
if status['data'].checkState() == QtCore.Qt.Unchecked:
self.disable_status(status)
self.update_progress(i)
self.stop_progress()
self.backup_scans()
return self.grid
def list_orientations(self):
message_box = BaseDialog(self)
message_box.setMinimumWidth(600)
message_box.setMinimumHeight(600)
header = [
'i', 'x', 'y', 'z', 'Polar', 'Azi', 'Intensity', 'H', 'K', 'L',
'Diff'
]
peak_list = self.refine.get_peaks()
self.refine.assign_rings()
self.rings = self.refine.get_ring_hkls()
orient_layout = QtWidgets.QHBoxLayout()
if self.refine.primary is None:
self.refine.primary = 0
if self.refine.secondary is None:
self.refine.secondary = 1
self.primary_box = QtWidgets.QLineEdit(str(self.refine.primary))
self.primary_box.setAlignment(QtCore.Qt.AlignRight)
self.primary_box.setFixedWidth(80)
self.secondary_box = QtWidgets.QLineEdit(str(self.refine.secondary))
self.secondary_box.setAlignment(QtCore.Qt.AlignRight)
self.secondary_box.setFixedWidth(80)
orient_button = QtWidgets.QPushButton('Orient')
orient_button.clicked.connect(self.orient)
refine_button = QtWidgets.QPushButton('Refine')
refine_button.clicked.connect(self.refine_orientation)
restore_button = QtWidgets.QPushButton('Restore')
restore_button.clicked.connect(self.restore_orientation)
orient_layout.addStretch()
orient_layout.addWidget(QtWidgets.QLabel('Primary'))
orient_layout.addWidget(self.primary_box)
orient_layout.addWidget(QtWidgets.QLabel('Secondary'))
orient_layout.addWidget(self.secondary_box)
orient_layout.addStretch()
orient_layout.addWidget(orient_button)
orient_layout.addWidget(refine_button)
orient_layout.addWidget(restore_button)
grid = QtWidgets.QGridLayout()
grid.setSpacing(10)
self.lattice = GridParameters()
self.lattice.add('a', self.refine.a, 'a', False)
self.lattice.add('b', self.refine.b, 'b', False)
self.lattice.add('c', self.refine.c, 'c', False)
self.lattice.add('alpha', self.refine.alpha, 'alpha', False)
self.lattice.add('beta', self.refine.beta, 'beta', False)
self.lattice.add('gamma', self.refine.gamma, 'gamma', False)
p = self.lattice['a']
p.box.setFixedWidth(80)
label, value, checkbox = p.label, p.value, p.vary
grid.addWidget(p.label, 0, 0, QtCore.Qt.AlignRight)
grid.addWidget(p.box, 0, 1, QtCore.Qt.AlignHCenter)
grid.addWidget(p.checkbox, 0, 2, QtCore.Qt.AlignHCenter)
p = self.lattice['b']
p.box.setFixedWidth(80)
label, value, checkbox = p.label, p.value, p.vary
grid.addWidget(p.label, 0, 3, QtCore.Qt.AlignRight)
grid.addWidget(p.box, 0, 4, QtCore.Qt.AlignHCenter)
grid.addWidget(p.checkbox, 0, 5, QtCore.Qt.AlignHCenter)
p = self.lattice['c']
p.box.setFixedWidth(80)
label, value, checkbox = p.label, p.value, p.vary
grid.addWidget(p.label, 0, 6, QtCore.Qt.AlignRight)
grid.addWidget(p.box, 0, 7, QtCore.Qt.AlignHCenter)
grid.addWidget(p.checkbox, 0, 8, QtCore.Qt.AlignHCenter)
p = self.lattice['alpha']
p.box.setFixedWidth(80)
label, value, checkbox = p.label, p.value, p.vary
grid.addWidget(p.label, 1, 0, QtCore.Qt.AlignRight)
grid.addWidget(p.box, 1, 1, QtCore.Qt.AlignHCenter)
grid.addWidget(p.checkbox, 1, 2, QtCore.Qt.AlignHCenter)
p = self.lattice['beta']
p.box.setFixedWidth(80)
label, value, checkbox = p.label, p.value, p.vary
grid.addWidget(p.label, 1, 3, QtCore.Qt.AlignRight)
grid.addWidget(p.box, 1, 4, QtCore.Qt.AlignHCenter)
grid.addWidget(p.checkbox, 1, 5, QtCore.Qt.AlignHCenter)
p = self.lattice['gamma']
p.box.setFixedWidth(80)
label, value, checkbox = p.label, p.value, p.vary
grid.addWidget(p.label, 1, 6, QtCore.Qt.AlignRight)
grid.addWidget(p.box, 1, 7, QtCore.Qt.AlignHCenter)
grid.addWidget(p.checkbox, 1, 8, QtCore.Qt.AlignHCenter)
self.table_view = QtWidgets.QTableView()
self.table_model = NXTableModel(self, peak_list, header)
self.table_view.setModel(self.table_model)
self.table_view.resizeColumnsToContents()
self.table_view.horizontalHeader().stretchLastSection()
self.table_view.setSelectionBehavior(
QtWidgets.QAbstractItemView.SelectRows)
self.table_view.doubleClicked.connect(self.plot_peak)
self.table_view.setSortingEnabled(True)
self.table_view.sortByColumn(0, QtCore.Qt.AscendingOrder)
layout = QtWidgets.QVBoxLayout()
layout.addLayout(orient_layout)
layout.addLayout(grid)
layout.addWidget(self.table_view)
close_layout = QtWidgets.QHBoxLayout()
self.status_text = QtWidgets.QLabel('Score: %.4f' %
self.refine.score())
self.tolerance_box = QtWidgets.QLineEdit(str(
self.refine.hkl_tolerance))
self.tolerance_box.setAlignment(QtCore.Qt.AlignRight)
self.tolerance_box.setMaxLength(5)
self.tolerance_box.editingFinished.connect(self.update_table)
self.tolerance_box.setFixedWidth(80)
save_button = QtWidgets.QPushButton('Save Orientation')
save_button.clicked.connect(self.save_orientation)
close_button = QtWidgets.QPushButton('Close Window')
close_button.clicked.connect(message_box.close)
close_layout.addWidget(self.status_text)
close_layout.addStretch()
close_layout.addWidget(QtWidgets.QLabel('Threshold'))
close_layout.addWidget(self.tolerance_box)
close_layout.addStretch()
close_layout.addWidget(save_button)
close_layout.addStretch()
close_layout.addWidget(close_button)
layout.addLayout(close_layout)
message_box.setLayout(layout)
message_box.setWindowTitle('%s Peak Table' % self.entry.nxtitle)
message_box.adjustSize()
message_box.show()
self.plotview = None