Esempi in Python per get_info

Esempio n. 1

File: test_pkg_info.py Progetto: yarikoptic/nibabel

def test_pkg_info():
    """Smoke test nibabel.get_info()
    
    Hits:
        - nibabel.get_info
        - nibabel.pkg_info.get_pkg_info
        - nibabel.pkg_info.pkg_commit_hash
    """
    info = nib.get_info()

Esempio n. 2

File: test_pkg_info.py Progetto: Eric89GXL/nibabel

def test_pkg_info():
    """Simple smoke test
    
    Hits:
        - nibabel.get_info
        - nibabel.pkg_info.get_pkg_info
        - nibabel.pkg_info.pkg_commit_hash
    """
    info = nib.get_info()

Esempio n. 3

File: tWaveletStatistics.py Progetto: Ferrumofomega/HCP

#===============================================================================

sTime = time.time()

waveName = 'coif1';
waveLevel = 5

InputFileName = os.path.basename(niftiFileDir)
(InputFileDir, InputFileName) = os.path.split(niftiFileDir)
InputfileBaseName = fStripExtension( InputFileName )

#print InputFileName, InputfileBaseName, InputFileDir

nimBabel = nib.load(niftiFileDir)
nimBabelData = nimBabel.get_data()
nimBabelInfo = nib.get_info()
nimBabelAffine = nimBabel.get_affine()
nimBabelHeader = nimBabel.get_header().structarr
nimBabelPixDim = nimBabelHeader['pixdim']
numpyBabelDataSz = numpy.asarray(nimBabelData.shape)

if len(numpyBabelDataSz) <= 3:
    print 'ERROR: Wrong dim size input...'
    exit -1
 
#VoxelSD = scipy.std( nimBabelData, axis=3 )
#frameRMS = list()
#frameRMS_MM = list()
#frameSD = list()

nStats = 6

Esempio n. 4

        fileID.write('%.8f' % inputData[2, i] + "\n")


#===============================================================================

sTime = time.time()

InputFileName = os.path.basename(niftiFileDir)
(InputFileDir, InputFileName) = os.path.split(niftiFileDir)
InputfileBaseName = fStripExtension(InputFileName)

#print InputFileName, InputfileBaseName, InputFileDir

nimBabel = nib.load(niftiFileDir)
nimBabelData = nimBabel.get_data()
nimBabelInfo = nib.get_info()
nimBabelAffine = nimBabel.get_affine()
nimBabelHeader = nimBabel.get_header().structarr
nimBabelPixDim = nimBabelHeader['pixdim']
numpyBabelDataSz = numpy.asarray(nimBabelData.shape)

if len(numpyBabelDataSz) <= 3:
    print 'ERROR: Wrong dim size input...'
    exit - 1

# Temporal SNR in brain mask
# Simple SNR (mean/SNR)
# of frames greater than .5 from motion outliers in FLS
# of frames with DVARs above 0.5
# of frames with DVARs above 0.7
# of frames with rms/mm frame above .2

Esempio n. 5

File: qcDWIPhantom.py Progetto: Ferrumofomega/HCP

# read the nifti file...
#===============================================================================
if (niftiDir[-1] != os.sep):
    niftiDir = niftiDir + os.sep
        
if (outputDir[-1] != os.sep):
    outputDir = outputDir + os.sep
    
InputFileBase = dwiFile.split('.')[0]

dwiDirFile = os.path.normpath(niftiDir +os.sep+ dwiFile)
print "Nifti File: " + dwiDirFile

nibDWI = nib.load(dwiDirFile)
nibDWIData = nibDWI.get_data()
nibDWIInfo = nib.get_info()
nibDWIAffine = nibDWI.get_affine()
nibDWIHeader = nibDWI.get_header().structarr
nibDWIPixDim = nibDWIHeader['pixdim']
nibDWIDataSz = numpy.asarray(nibDWIData.shape)
print nibDWIDataSz

#===============================================================================
# read the bval file...
#===============================================================================
if bvalsFile:
    bvalsFile = os.path.normpath(niftiDir +os.sep+ bvalsFile)
else:
    bvalsFile = os.path.normpath(niftiDir +os.sep+ InputFileBase + '.bval')
print 'Bvals File: %s' % bvalsFile

Esempio n. 6

# read the nifti file...
#===============================================================================
if (niftiDir[-1] != os.sep):
    niftiDir = niftiDir + os.sep

if (outputDir[-1] != os.sep):
    outputDir = outputDir + os.sep

InputFileBase = dwiFile.split('.')[0]

dwiDirFile = os.path.normpath(niftiDir + os.sep + dwiFile)
print "Nifti File: " + dwiDirFile

nibDWI = nib.load(dwiDirFile)
nibDWIData = nibDWI.get_data()
nibDWIInfo = nib.get_info()
nibDWIAffine = nibDWI.get_affine()
nibDWIHeader = nibDWI.get_header().structarr
nibDWIPixDim = nibDWIHeader['pixdim']
nibDWIDataSz = numpy.asarray(nibDWIData.shape)
print nibDWIDataSz

#===============================================================================
# read the bval file...
#===============================================================================
if bvalsFile:
    bvalsFile = os.path.normpath(niftiDir + os.sep + bvalsFile)
else:
    bvalsFile = os.path.normpath(niftiDir + os.sep + InputFileBase + '.bval')
print 'Bvals File: %s' % bvalsFile