def test_fetch_atlas_surf_destrieux(tmp_path, request_mocker, verbose=0):
data_dir = str(tmp_path / 'destrieux_surface')
os.mkdir(data_dir)
# Create mock annots
for hemi in ('left', 'right'):
nibabel.freesurfer.write_annot(
os.path.join(data_dir,
'%s.aparc.a2009s.annot' % hemi),
np.arange(4), np.zeros((4, 5)), 5 * ['a'],)
bunch = atlas.fetch_atlas_surf_destrieux(data_dir=tmp_path, verbose=0)
# Our mock annots have 4 labels
assert len(bunch.labels) == 4
assert bunch.map_left.shape == (4, )
assert bunch.map_right.shape == (4, )
assert bunch.description != ''
def test_fetch_atlas_surf_destrieux(data_dir=tst.tmpdir, verbose=0):
# Old nibabel versions does not support 'write_annot'
if LooseVersion(nibabel.__version__) <= LooseVersion('1.2.0'):
raise SkipTest
data_dir = os.path.join(tst.tmpdir, 'destrieux_surface')
os.mkdir(data_dir)
# Create mock annots
for hemi in ('left', 'right'):
nibabel.freesurfer.write_annot(
os.path.join(data_dir,
'%s.aparc.a2009s.annot' % hemi),
np.arange(4), np.zeros((4, 5)), 5 * ['a'],
)
bunch = atlas.fetch_atlas_surf_destrieux(data_dir=tst.tmpdir, verbose=0)
# Our mock annots have 4 labels
assert_equal(len(bunch.labels), 4)
assert_equal(bunch.map_left.shape, (4, ))
assert_equal(bunch.map_right.shape, (4, ))
assert_not_equal(bunch.description, '')
def test_fetch_atlas_surf_destrieux(data_dir=tst.tmpdir, verbose=0):
# Old nibabel versions does not support 'write_annot'
if LooseVersion(nibabel.__version__) <= LooseVersion('1.2.0'):
raise SkipTest
data_dir = os.path.join(tst.tmpdir, 'destrieux_surface')
os.mkdir(data_dir)
# Create mock annots
for hemi in ('left', 'right'):
nibabel.freesurfer.write_annot(
os.path.join(data_dir,
'%s.aparc.a2009s.annot' % hemi),
np.arange(4), np.zeros((4, 5)), 5 * ['a'],
)
bunch = atlas.fetch_atlas_surf_destrieux(data_dir=tst.tmpdir, verbose=0)
# Our mock annots have 4 labels
assert_equal(len(bunch.labels), 4)
assert_equal(bunch.map_left.shape, (4, ))
assert_equal(bunch.map_right.shape, (4, ))
assert_not_equal(bunch.description, '')
