def test_space_time_realign():
path, fname = psplit(funcfile)
original_affine = load_image(funcfile).affine
path, fname = psplit(funcfile)
froot, _ = fname.split('.', 1)
with InTemporaryDirectory():
# Make another image with .nii extension and extra dot in filename
save_image(load_image(funcfile), 'my.test.nii')
for in_fname, out_fname in ((funcfile, froot + '_mc.nii.gz'),
('my.test.nii', 'my.test_mc.nii.gz')):
xforms = reg.space_time_realign(in_fname, 2.0, out_name='.')
assert_true(np.allclose(xforms[0].as_affine(), np.eye(4), atol=1e-7))
assert_false(np.allclose(xforms[-1].as_affine(), np.eye(4), atol=1e-3))
img = load_image(out_fname)
npt.assert_almost_equal(original_affine, img.affine)
def test_space_time_realign():
path, fname = psplit(funcfile)
original_affine = load_image(funcfile).affine
path, fname = psplit(funcfile)
froot, _ = fname.split('.', 1)
with InTemporaryDirectory():
# Make another image with .nii extension and extra dot in filename
save_image(load_image(funcfile), 'my.test.nii')
for in_fname, out_fname in ((funcfile, froot + '_mc.nii.gz'),
('my.test.nii', 'my.test_mc.nii.gz')):
xforms = reg.space_time_realign(in_fname, 2.0, out_name='.')
assert_true(
np.allclose(xforms[0].as_affine(), np.eye(4), atol=1e-7))
assert_false(
np.allclose(xforms[-1].as_affine(), np.eye(4), atol=1e-3))
img = load_image(out_fname)
npt.assert_almost_equal(original_affine, img.affine)
def test_space_time_realign():
with InTemporaryDirectory() as tmpdir:
xform = reg.space_time_realign(funcfile, 2.0, out_name='./')
def test_space_time_realign():
with InTemporaryDirectory() as tmpdir:
xform = reg.space_time_realign(funcfile, 2.0, out_name='./')