def test_MeshFix_outputs():
output_map = dict(mesh_file=dict(), )
outputs = MeshFix.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_MeshFix_outputs():
output_map = dict(mesh_file=dict(),
)
outputs = MeshFix.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_MeshFix_inputs():
input_map = dict(
args=dict(argstr='%s', ),
cut_inner=dict(argstr='--cut-inner %d', ),
cut_outer=dict(argstr='--cut-outer %d', ),
decouple_inin=dict(argstr='--decouple-inin %d', ),
decouple_outin=dict(argstr='--decouple-outin %d', ),
decouple_outout=dict(argstr='--decouple-outout %d', ),
dilation=dict(argstr='--dilate %d', ),
dont_clean=dict(argstr='--no-clean', ),
environ=dict(
nohash=True,
usedefault=True,
),
epsilon_angle=dict(argstr='-a %f', ),
finetuning_distance=dict(
argstr='%f',
requires=['finetuning_substeps'],
),
finetuning_inwards=dict(
argstr='--fineTuneIn ',
requires=['finetuning_distance', 'finetuning_substeps'],
),
finetuning_outwards=dict(
argstr='--fineTuneIn ',
requires=['finetuning_distance', 'finetuning_substeps'],
xor=['finetuning_inwards'],
),
finetuning_substeps=dict(
argstr='%d',
requires=['finetuning_distance'],
),
ignore_exception=dict(
nohash=True,
usedefault=True,
),
in_file1=dict(
argstr='%s',
mandatory=True,
position=1,
),
in_file2=dict(
argstr='%s',
position=2,
),
join_closest_components=dict(
argstr='-jc',
xor=['join_closest_components'],
),
join_overlapping_largest_components=dict(
argstr='-j',
xor=['join_closest_components'],
),
laplacian_smoothing_steps=dict(argstr='--smooth %d', ),
number_of_biggest_shells=dict(argstr='--shells %d', ),
out_filename=dict(
argstr='-o %s',
genfile=True,
),
output_type=dict(usedefault=True, ),
quiet_mode=dict(argstr='-q', ),
remove_handles=dict(argstr='--remove-handles', ),
save_as_freesurfer_mesh=dict(
argstr='--fsmesh',
xor=['save_as_vrml', 'save_as_stl'],
),
save_as_stl=dict(
argstr='--stl',
xor=['save_as_vmrl', 'save_as_freesurfer_mesh'],
),
save_as_vmrl=dict(
argstr='--wrl',
xor=['save_as_stl', 'save_as_freesurfer_mesh'],
),
set_intersections_to_one=dict(argstr='--intersect', ),
terminal_output=dict(
mandatory=True,
nohash=True,
),
uniform_remeshing_steps=dict(
argstr='-u %d',
requires=['uniform_remeshing_vertices'],
),
uniform_remeshing_vertices=dict(
argstr='--vertices %d',
requires=['uniform_remeshing_steps'],
),
x_shift=dict(argstr='--smooth %d', ),
)
inputs = MeshFix.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_MeshFix_inputs():
input_map = dict(args=dict(argstr='%s',
),
cut_inner=dict(argstr='--cut-inner %d',
),
cut_outer=dict(argstr='--cut-outer %d',
),
decouple_inin=dict(argstr='--decouple-inin %d',
),
decouple_outin=dict(argstr='--decouple-outin %d',
),
decouple_outout=dict(argstr='--decouple-outout %d',
),
dilation=dict(argstr='--dilate %d',
),
dont_clean=dict(argstr='--no-clean',
),
environ=dict(nohash=True,
usedefault=True,
),
epsilon_angle=dict(argstr='-a %f',
),
finetuning_distance=dict(argstr='%f',
requires=['finetuning_substeps'],
),
finetuning_inwards=dict(argstr='--fineTuneIn ',
requires=['finetuning_distance', 'finetuning_substeps'],
),
finetuning_outwards=dict(argstr='--fineTuneIn ',
requires=['finetuning_distance', 'finetuning_substeps'],
xor=['finetuning_inwards'],
),
finetuning_substeps=dict(argstr='%d',
requires=['finetuning_distance'],
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
in_file1=dict(argstr='%s',
mandatory=True,
position=1,
),
in_file2=dict(argstr='%s',
position=2,
),
join_closest_components=dict(argstr='-jc',
xor=['join_closest_components'],
),
join_overlapping_largest_components=dict(argstr='-j',
xor=['join_closest_components'],
),
laplacian_smoothing_steps=dict(argstr='--smooth %d',
),
number_of_biggest_shells=dict(argstr='--shells %d',
),
out_filename=dict(argstr='-o %s',
genfile=True,
),
output_type=dict(usedefault=True,
),
quiet_mode=dict(argstr='-q',
),
remove_handles=dict(argstr='--remove-handles',
),
save_as_freesurfer_mesh=dict(argstr='--fsmesh',
xor=['save_as_vrml', 'save_as_stl'],
),
save_as_stl=dict(argstr='--stl',
xor=['save_as_vmrl', 'save_as_freesurfer_mesh'],
),
save_as_vmrl=dict(argstr='--wrl',
xor=['save_as_stl', 'save_as_freesurfer_mesh'],
),
set_intersections_to_one=dict(argstr='--intersect',
),
terminal_output=dict(nohash=True,
),
uniform_remeshing_steps=dict(argstr='-u %d',
requires=['uniform_remeshing_vertices'],
),
uniform_remeshing_vertices=dict(argstr='--vertices %d',
requires=['uniform_remeshing_steps'],
),
x_shift=dict(argstr='--smooth %d',
),
)
inputs = MeshFix.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value