def test_getitem():
r3 = CudaFn(3)
y = [1, 2, 3]
x = r3.element(y)
for index in [0, 1, 2, -1, -2, -3]:
assert x[index] == y[index]
def test_astype():
# Complex not implemented
rn = CudaFn(3, weighting=1.5)
assert rn.astype('float32') == rn
with pytest.raises(TypeError):
rn.astype(complex)
def _test_getslice(slice):
# Validate get against python list behaviour
r6 = CudaFn(6)
y = [0, 1, 2, 3, 4, 5]
x = r6.element(y)
assert all_equal(x[slice], y[slice])
def test_setitem():
r3 = CudaFn(3)
x = r3.element([42, 42, 42])
for index in [0, 1, 2, -1, -2, -3]:
x[index] = index
assert x[index] == index
def test_astype():
# Complex not implemented
rn = CudaFn(3, weight=1.5)
assert rn.astype('float32') == rn
with pytest.raises(TypeError):
rn.astype(complex)
def test_getslice_index_error():
r3 = CudaFn(3)
xd = r3.element([1, 2, 3])
# Bad slice
with pytest.raises(IndexError):
xd[10:13]
def _test_getslice(slice):
# Validate get against python list behaviour
r6 = CudaFn(6)
y = [0, 1, 2, 3, 4, 5]
x = r6.element(y)
assert all_equal(x[slice], y[slice])
def test_getslice_index_error():
r3 = CudaFn(3)
xd = r3.element([1, 2, 3])
# Bad slice
with pytest.raises(IndexError):
xd[10:13]
def test_setitem():
r3 = CudaFn(3)
x = r3.element([42, 42, 42])
for index in [0, 1, 2, -1, -2, -3]:
x[index] = index
assert x[index] == index
def test_getitem():
r3 = CudaFn(3)
y = [1, 2, 3]
x = r3.element(y)
for index in [0, 1, 2, -1, -2, -3]:
assert x[index] == y[index]
def test_vector_dist(exponent):
rn = CudaFn(5)
[xarr, yarr], [x, y] = noise_elements(rn, n=2)
weight = _pos_vector(CudaFn(5))
weighting = CudaFnArrayWeighting(weight, exponent=exponent)
if exponent in (1.0, float('inf')):
true_dist = np.linalg.norm(weight.asarray() * (xarr - yarr),
ord=exponent)
else:
true_dist = np.linalg.norm(weight.asarray()**(1 / exponent) *
(xarr - yarr),
ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
weighting.dist(x, y)
else:
assert almost_equal(weighting.dist(x, y), true_dist)
# Same with free function
pdist = cu_weighted_dist(weight, exponent=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
pdist(x, y)
else:
assert almost_equal(pdist(x, y), true_dist)
def test_vector_norm(exponent):
rn = CudaFn(5)
xarr, x = noise_elements(rn)
weight = _pos_vector(CudaFn(5))
weighting = CudaFnArrayWeighting(weight, exponent=exponent)
if exponent in (1.0, float('inf')):
true_norm = np.linalg.norm(weight.asarray() * xarr, ord=exponent)
else:
true_norm = np.linalg.norm(weight.asarray()**(1 / exponent) * xarr,
ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
weighting.norm(x)
else:
assert almost_equal(weighting.norm(x), true_norm)
# Same with free function
pnorm = cu_weighted_norm(weight, exponent=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
pnorm(x)
else:
assert almost_equal(pnorm(x), true_norm)
def test_modify():
r3 = CudaFn(3)
xd = r3.element([1, 2, 3])
yd = r3.element(data_ptr=xd.data_ptr)
yd[:] = [5, 6, 7]
assert all_equal(xd, yd)
def test_modify():
r3 = CudaFn(3)
xd = r3.element([1, 2, 3])
yd = r3.element(data_ptr=xd.data_ptr)
yd[:] = [5, 6, 7]
assert all_equal(xd, yd)
def test_offset_sub_vector():
r6 = CudaFn(6)
r3 = CudaFn(3)
xd = r6.element([1, 2, 3, 4, 5, 6])
yd = r3.element(data_ptr=xd.data_ptr + 3 * xd.space.dtype.itemsize)
yd[:] = [7, 8, 9]
assert all_equal([1, 2, 3, 7, 8, 9], xd)
def test_setitem_index_error():
r3 = CudaFn(3)
x = r3.element([1, 2, 3])
with pytest.raises(IndexError):
x[-4] = 0
with pytest.raises(IndexError):
x[3] = 0
def test_setitem_index_error():
r3 = CudaFn(3)
x = r3.element([1, 2, 3])
with pytest.raises(IndexError):
x[-4] = 0
with pytest.raises(IndexError):
x[3] = 0
def test_sub_vector():
r6 = CudaFn(6)
r3 = CudaFn(3)
xd = r6.element([1, 2, 3, 4, 5, 6])
yd = r3.element(data_ptr=xd.data_ptr)
yd[:] = [7, 8, 9]
assert all_almost_equal([7, 8, 9, 4, 5, 6], xd)
def _test_dtype(dt):
if dt not in CUDA_DTYPES:
with pytest.raises(TypeError):
r3 = CudaFn(3, dt)
else:
r3 = CudaFn(3, dt)
x = r3.element([1, 2, 3])
y = r3.element([4, 5, 6])
z = x + y
assert all_almost_equal(z, [5, 7, 9])
def _test_setslice(slice):
# Validate set against python list behaviour
r6 = CudaFn(6)
z = [7, 8, 9, 10, 11, 10]
y = [0, 1, 2, 3, 4, 5]
x = r6.element(y)
x[slice] = z[slice]
y[slice] = z[slice]
assert all_equal(x, y)
def _test_dtype(dt):
if dt not in CUDA_DTYPES:
with pytest.raises(TypeError):
r3 = CudaFn(3, dt)
else:
r3 = CudaFn(3, dt)
x = r3.element([1, 2, 3])
y = r3.element([4, 5, 6])
z = x + y
assert all_almost_equal(z, [5, 7, 9])
def _test_setslice(slice):
# Validate set against python list behaviour
r6 = CudaFn(6)
z = [7, 8, 9, 10, 11, 10]
y = [0, 1, 2, 3, 4, 5]
x = r6.element(y)
x[slice] = z[slice]
y[slice] = z[slice]
assert all_equal(x, y)
def test_norm(exponent):
r3 = CudaFn(3, exponent=exponent)
xarr, x = noise_elements(r3)
correct_norm = np.linalg.norm(xarr, ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
r3.norm(x)
x.norm()
else:
assert almost_equal(r3.norm(x), correct_norm)
assert almost_equal(x.norm(), correct_norm)
def test_ndarray_init():
r3 = CudaFn(3)
x0 = np.array([1., 2., 3.])
x = r3.element(x0)
assert all_equal(x, x0)
x0 = np.array([1, 2, 3], dtype=float64)
x = r3.element(x0)
assert all_equal(x, x0)
x0 = np.array([1, 2, 3], dtype=int)
x = r3.element(x0)
assert all_equal(x, x0)
def test_slice_is_view():
# Verify that modifications of a view modify the original data
r10 = CudaFn(10)
xh = np.array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
xd = r10.element(xh)
yh = xh[1:8:2]
yh[:] = [0, 0, 0, 0]
yd = xd[1:8:2]
yd[:] = [0, 0, 0, 0]
assert all_equal(xh, xd)
assert all_equal(yh, yd)
def test_slice_is_view():
# Verify that modifications of a view modify the original data
r10 = CudaFn(10)
xh = np.array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
xd = r10.element(xh)
yh = xh[1:8:2]
yh[:] = [0, 0, 0, 0]
yd = xd[1:8:2]
yd[:] = [0, 0, 0, 0]
assert all_equal(xh, xd)
assert all_equal(yh, yd)
def test_norm(exponent):
r3 = CudaFn(3, exponent=exponent)
xarr, x = noise_elements(r3)
correct_norm = np.linalg.norm(xarr, ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
r3.norm(x)
x.norm()
else:
assert almost_equal(r3.norm(x), correct_norm)
assert almost_equal(x.norm(), correct_norm)
def test_ndarray_init():
r3 = CudaFn(3)
x0 = np.array([1., 2., 3.])
x = r3.element(x0)
assert all_equal(x, x0)
x0 = np.array([1, 2, 3], dtype=float64)
x = r3.element(x0)
assert all_equal(x, x0)
x0 = np.array([1, 2, 3], dtype=int)
x = r3.element(x0)
assert all_equal(x, x0)
def test_dist(exponent):
r3 = CudaFn(3, exponent=exponent)
[xarr, yarr], [x, y] = noise_elements(r3, n=2)
correct_dist = np.linalg.norm(xarr - yarr, ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
r3.dist(x, y)
with pytest.raises(NotImplementedError):
x.dist(y)
else:
assert almost_equal(r3.dist(x, y), correct_dist)
assert almost_equal(x.dist(y), correct_dist)
def test_dist(exponent):
r3 = CudaFn(3, exponent=exponent)
[xarr, yarr], [x, y] = noise_elements(r3, n=2)
correct_dist = np.linalg.norm(xarr - yarr, ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
r3.dist(x, y)
with pytest.raises(NotImplementedError):
x.dist(y)
else:
assert almost_equal(r3.dist(x, y), correct_dist)
assert almost_equal(x.dist(y), correct_dist)
def test_slice_of_slice():
# Verify that creating slices from slices works as expected
r10 = CudaFn(10)
xh = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9]
xd = r10.element(xh)
yh = xh[1:8:2]
yd = xd[1:8:2]
assert all_equal(yh, yd)
zh = yh[1::2]
zd = yd[1::2]
assert all_equal(zh, zd)
def test_slice_of_slice():
# Verify that creating slices from slices works as expected
r10 = CudaFn(10)
xh = [0, 1, 2, 3, 4, 5, 6, 7, 8, 9]
xd = r10.element(xh)
yh = xh[1:8:2]
yd = xd[1:8:2]
assert all_equal(yh, yd)
zh = yh[1::2]
zd = yd[1::2]
assert all_equal(zh, zd)
def test_const_dist(exponent):
rn = CudaFn(5)
[xarr, yarr], [x, y] = noise_elements(rn, n=2)
constant = 1.5
weighting = CudaFnConstWeighting(constant, exponent=exponent)
factor = 1 if exponent == float('inf') else constant**(1 / exponent)
true_dist = factor * np.linalg.norm(xarr - yarr, ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
weighting.dist(x, y)
else:
assert almost_equal(weighting.dist(x, y), true_dist)
# Same with free function
pdist = cu_weighted_dist(constant, exponent=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
pdist(x, y)
else:
assert almost_equal(pdist(x, y), true_dist)
def test_const_norm(exponent):
rn = CudaFn(5)
xarr, x = noise_elements(rn)
constant = 1.5
weighting = CudaFnConstWeighting(constant, exponent=exponent)
factor = 1 if exponent == float('inf') else constant**(1 / exponent)
true_norm = factor * np.linalg.norm(xarr, ord=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
weighting.norm(x)
else:
assert almost_equal(weighting.norm(x), true_norm)
# Same with free function
pnorm = cu_weighted_norm(constant, exponent=exponent)
if exponent == float('inf'):
# Not yet implemented, should raise
with pytest.raises(NotImplementedError):
pnorm(x)
else:
assert almost_equal(pnorm(x), true_norm)
def test_incompatible_operations():
r3 = CudaFn(3)
R3h = odl.rn(3)
xA = r3.zero()
xB = R3h.zero()
with pytest.raises(TypeError):
xA += xB
with pytest.raises(TypeError):
xA -= xB
with pytest.raises(TypeError):
xA + xB
with pytest.raises(TypeError):
xA - xB
def test_vector_equals():
rn = CudaFn(5)
weight = _pos_vector(rn)
weighting = CudaFnArrayWeighting(weight)
weighting2 = CudaFnArrayWeighting(weight)
assert weighting == weighting2
def test_setslice_index_error():
r3 = CudaFn(3)
xd = r3.element([1, 2, 3])
# Bad slice
with pytest.raises(IndexError):
xd[10:13] = [1, 2, 3]
# Bad size of rhs
with pytest.raises(IndexError):
xd[:] = []
with pytest.raises(IndexError):
xd[:] = [1, 2]
with pytest.raises(IndexError):
xd[:] = [1, 2, 3, 4]
def test_setslice_index_error():
r3 = CudaFn(3)
xd = r3.element([1, 2, 3])
# Bad slice
with pytest.raises(IndexError):
xd[10:13] = [1, 2, 3]
# Bad size of rhs
with pytest.raises(IndexError):
xd[:] = []
with pytest.raises(IndexError):
xd[:] = [1, 2]
with pytest.raises(IndexError):
xd[:] = [1, 2, 3, 4]
def test_incompatible_operations():
r3 = CudaFn(3)
R3h = odl.rn(3)
xA = r3.zero()
xB = R3h.zero()
with pytest.raises(TypeError):
xA += xB
with pytest.raises(TypeError):
xA -= xB
with pytest.raises(TypeError):
xA + xB
with pytest.raises(TypeError):
xA - xB
def test_const_inner():
rn = CudaFn(5)
[xarr, yarr], [x, y] = noise_elements(rn, 2)
constant = 1.5
weighting = CudaFnConstWeighting(constant)
true_inner = constant * np.vdot(yarr, xarr)
assert almost_equal(weighting.inner(x, y), true_inner)
def test_vector_inner():
rn = CudaFn(5)
[xarr, yarr], [x, y] = noise_elements(rn, 2)
weight = _pos_vector(CudaFn(5))
weighting = CudaFnArrayWeighting(weight)
true_inner = np.vdot(yarr, xarr * weight.asarray())
assert almost_equal(weighting.inner(x, y), true_inner)
# Same with free function
inner_vec = cu_weighted_inner(weight)
assert almost_equal(inner_vec(x, y), true_inner)
# Exponent != 2 -> no inner product, should raise
with pytest.raises(NotImplementedError):
CudaFnArrayWeighting(weight, exponent=1.0).inner(x, y)
def test_init_weighting(exponent):
const = 1.5
weight_vec = _pos_vector(CudaFn(3))
weight_elem = CudaFn(3, dtype='float32').element(weight_vec)
f3_none = CudaFn(3, dtype='float32', exponent=exponent)
f3_const = CudaFn(3, dtype='float32', weighting=const, exponent=exponent)
f3_vec = CudaFn(3,
dtype='float32',
weighting=weight_vec,
exponent=exponent)
f3_elem = CudaFn(3,
dtype='float32',
weighting=weight_elem,
exponent=exponent)
weighting_none = CudaFnNoWeighting(exponent=exponent)
weighting_const = CudaFnConstWeighting(const, exponent=exponent)
weighting_vec = CudaFnArrayWeighting(weight_vec, exponent=exponent)
weighting_elem = CudaFnArrayWeighting(weight_elem, exponent=exponent)
assert f3_none.weighting == weighting_none
assert f3_const.weighting == weighting_const
assert f3_vec.weighting == weighting_vec
assert f3_elem.weighting == weighting_elem
def test_inner():
r3 = CudaFn(3)
x = r3.element([1, 2, 3])
y = r3.element([5, 3, 9])
correct_inner = 1 * 5 + 2 * 3 + 3 * 9
# Space function
assert almost_equal(r3.inner(x, y), correct_inner)
# Exponent != 2 -> no inner product
r3 = CudaFn(3, exponent=1)
x = r3.element([1, 2, 3])
y = r3.element([5, 3, 9])
with pytest.raises(NotImplementedError):
r3.inner(x, y)
with pytest.raises(NotImplementedError):
x.inner(y)
def test_vector_is_valid():
rn = CudaFn(5)
weight = _pos_vector(rn)
weighting = CudaFnArrayWeighting(weight)
assert weighting.is_valid()
# Invalid
weight[0] = 0
weighting = CudaFnArrayWeighting(weight)
assert not weighting.is_valid()
def test_sub_vector():
r6 = CudaFn(6)
r3 = CudaFn(3)
xd = r6.element([1, 2, 3, 4, 5, 6])
yd = r3.element(data_ptr=xd.data_ptr)
yd[:] = [7, 8, 9]
assert all_almost_equal([7, 8, 9, 4, 5, 6], xd)
def test_offset_sub_vector():
r6 = CudaFn(6)
r3 = CudaFn(3)
xd = r6.element([1, 2, 3, 4, 5, 6])
yd = r3.element(data_ptr=xd.data_ptr + 3 * xd.space.dtype.itemsize)
yd[:] = [7, 8, 9]
assert all_equal([1, 2, 3, 7, 8, 9], xd)
def test_inner():
r3 = CudaFn(3)
x = r3.element([1, 2, 3])
y = r3.element([5, 3, 9])
correct_inner = 1 * 5 + 2 * 3 + 3 * 9
# Space function
assert almost_equal(r3.inner(x, y), correct_inner)
# Exponent != 2 -> no inner product
r3 = CudaFn(3, exponent=1)
x = r3.element([1, 2, 3])
y = r3.element([5, 3, 9])
with pytest.raises(NotImplementedError):
r3.inner(x, y)
with pytest.raises(NotImplementedError):
x.inner(y)
def test_vector_init():
rn = CudaFn(5)
weight_vec = _pos_vector(rn)
CudaFnVectorWeighting(weight_vec)
CudaFnVectorWeighting(rn.element(weight_vec))
def fn(request):
size, dtype = request.param.split()
return CudaFn(int(size), dtype=dtype)
def test_vector_init():
rn = CudaFn(5)
weight_vec = _pos_vector(rn)
CudaFnArrayWeighting(weight_vec)
CudaFnArrayWeighting(rn.element(weight_vec))
return CudaFn(int(size), dtype=dtype)
# Simply modify exp_params to modify the fixture
exp_params = [2.0, 1.0, float('inf'), 0.5, 1.5, 3.0]
exp_ids = [' p = {} '.format(p) for p in exp_params]
exp_fixture = pytest.fixture(scope="module", ids=exp_ids, params=exp_params)
@exp_fixture
def exponent(request):
return request.param
# Simply modify dtype_params to modify the fixture
dtype_params = CudaFn.available_dtypes()
dtype_ids = [' dtype = {} '.format(t) for t in dtype_params]
dtype_fixture = pytest.fixture(scope="module", ids=dtype_ids,
params=dtype_params)
@dtype_fixture
def dtype(request):
return request.param
ufunc_params = [ufunc for ufunc in odl.util.ufuncs.UFUNCS]
ufunc_ids = [' ufunc={} '.format(p[0]) for p in ufunc_params]
@pytest.fixture(scope="module", ids=ufunc_ids, params=ufunc_params)
def test_iterator():
r3 = CudaFn(3)
y = [1, 2, 3]
x = r3.element(y)
assert all_equal([a for a in x], [b for b in y])