Esempio n. 1
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    def test_distribute_climate(self):

        hef_file = get_demo_file('Hintereisferner.shp')
        rgidf = gpd.GeoDataFrame.from_file(hef_file)

        # loop because for some reason indexing wont work
        gdirs = []
        for index, entity in rgidf.iterrows():
            gdir = cfg.GlacierDir(entity, base_dir=self.testdir)
            gis.define_glacier_region(gdir, entity)
            gdirs.append(gdir)
        climate.distribute_climate_data(gdirs)

        nc_r = netCDF4.Dataset(get_demo_file('histalp_merged_hef.nc'))
        ref_h = nc_r.variables['hgt'][1, 1]
        ref_p = nc_r.variables['prcp'][:, 1, 1]
        ref_p *= cfg.params['prcp_scaling_factor']
        ref_t = nc_r.variables['temp'][:, 1, 1]
        nc_r.close()

        nc_r = netCDF4.Dataset(os.path.join(gdir.dir, 'climate_monthly.nc'))
        self.assertTrue(ref_h == nc_r.ref_hgt)
        np.testing.assert_allclose(ref_t, nc_r.variables['temp'][:])
        np.testing.assert_allclose(ref_p, nc_r.variables['prcp'][:])
        nc_r.close()
Esempio n. 2
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def climate_tasks(gdirs):
    """Prepare the climate data"""

    climate.distribute_climate_data(gdirs)

    # Get ref glaciers (all glaciers with MB)
    dfids = cfg.paths['wgms_rgi_links']
    dfids = pd.read_csv(dfids)['RGI_ID'].values

    ref_gdirs = [g for g in gdirs if g.rgi_id in dfids]
    execute_task(climate.mu_candidates, ref_gdirs)
    climate.compute_ref_t_stars(ref_gdirs)
    climate.distribute_t_stars(gdirs)
Esempio n. 3
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    def test_find_tstars(self):

        hef_file = get_demo_file('Hintereisferner.shp')
        rgidf = gpd.GeoDataFrame.from_file(hef_file)

        # loop because for some reason indexing wont work
        gdirs = []
        for index, entity in rgidf.iterrows():
            gdir = cfg.GlacierDir(entity, base_dir=self.testdir)
            gis.define_glacier_region(gdir, entity)
            gis.glacier_masks(gdir)
            centerlines.compute_centerlines(gdir)
            geometry.initialize_flowlines(gdir)
            geometry.catchment_area(gdir)
            geometry.catchment_width_geom(gdir)
            geometry.catchment_width_correction(gdir)
            gdirs.append(gdir)
        climate.distribute_climate_data(gdirs)
        climate.mu_candidates(gdir, div_id=0)

        hef_file = get_demo_file('mbdata_RGI40-11.00897.csv')
        mbdf = pd.read_csv(hef_file).set_index('YEAR')
        t_stars, bias = climate.t_star_from_refmb(gdir, mbdf['ANNUAL_BALANCE'])

        y, t, p = climate.mb_yearly_climate_on_glacier(gdir, div_id=0)

        # which years to look at
        selind = np.searchsorted(y, mbdf.index)
        t = t[selind]
        p = p[selind]

        mu_yr_clim = gdir.read_pickle('mu_candidates', div_id=0)
        for t_s, rmd in zip(t_stars, bias):
            mb_per_mu = p - mu_yr_clim.loc[t_s] * t
            md = utils.md(mbdf['ANNUAL_BALANCE'], mb_per_mu)
            np.testing.assert_allclose(md, rmd)
            self.assertTrue(np.abs(md/np.mean(mbdf['ANNUAL_BALANCE'])) < 0.1)
            r = utils.corrcoef(mbdf['ANNUAL_BALANCE'], mb_per_mu)
            self.assertTrue(r > 0.8)
Esempio n. 4
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    def test_mu_candidates(self):

        hef_file = get_demo_file('Hintereisferner.shp')
        rgidf = gpd.GeoDataFrame.from_file(hef_file)

        # loop because for some reason indexing wont work
        gdirs = []
        for index, entity in rgidf.iterrows():
            gdir = cfg.GlacierDir(entity, base_dir=self.testdir)
            gis.define_glacier_region(gdir, entity)
            gis.glacier_masks(gdir)
            centerlines.compute_centerlines(gdir)
            geometry.initialize_flowlines(gdir)
            geometry.catchment_area(gdir)
            geometry.catchment_width_geom(gdir)
            geometry.catchment_width_correction(gdir)
            gdirs.append(gdir)
        climate.distribute_climate_data(gdirs)
        climate.mu_candidates(gdir, div_id=0)

        se = gdir.read_pickle('mu_candidates')
        self.assertTrue(se.index[0] == 1802)
        self.assertTrue(se.index[-1] == 2003)

        df = pd.DataFrame()
        df['mu'] = se

        # Check that the moovin average of temp is negatively correlated
        # with the mus
        nc_r = netCDF4.Dataset(get_demo_file('histalp_merged_hef.nc'))
        ref_t = nc_r.variables['temp'][:, 1, 1]
        nc_r.close()
        ref_t = np.mean(ref_t.reshape((len(df), 12)), 1)
        ma = np.convolve(ref_t, np.ones(31) / float(31), 'same')
        df['temp'] = ma
        df = df.dropna()
        self.assertTrue(np.corrcoef(df['mu'], df['temp'])[0, 1] < -0.75)
Esempio n. 5
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def init_hef(reset=False):

    # test directory
    if not os.path.exists(testdir):
        os.makedirs(testdir)
        reset = True
    if not os.path.exists(os.path.join(testdir, 'RGI40-11.00897')):
        reset = True
    if not os.path.exists(os.path.join(testdir, 'RGI40-11.00897',
                                       'flowline_params.p')):
        reset = True

    # Init
    cfg.initialize()
    cfg.set_divides_db(get_demo_file('HEF_divided.shp'))
    cfg.paths['srtm_file'] = get_demo_file('hef_srtm.tif')
    cfg.paths['histalp_file'] = get_demo_file('histalp_merged_hef.nc')
    cfg.params['border'] = 40

    # loop because for some reason indexing wont work
    hef_file = get_demo_file('Hintereisferner.shp')
    rgidf = gpd.GeoDataFrame.from_file(hef_file)
    for index, entity in rgidf.iterrows():
        gdir = cfg.GlacierDir(entity, base_dir=testdir, reset=reset)

    if not reset:
        return gdir

    gis.define_glacier_region(gdir, entity)
    gis.glacier_masks(gdir)
    centerlines.compute_centerlines(gdir)
    centerlines.compute_downstream_lines(gdir)
    geometry.initialize_flowlines(gdir)
    geometry.catchment_area(gdir)
    geometry.catchment_width_geom(gdir)
    geometry.catchment_width_correction(gdir)
    climate.distribute_climate_data([gdir])
    climate.mu_candidates(gdir, div_id=0)
    hef_file = get_demo_file('mbdata_RGI40-11.00897.csv')
    mbdf = pd.read_csv(hef_file).set_index('YEAR')
    t_star, bias = climate.t_star_from_refmb(gdir, mbdf['ANNUAL_BALANCE'])
    climate.local_mustar_apparent_mb(gdir, t_star[-1], bias[-1])

    inversion.prepare_for_inversion(gdir)
    ref_v = 0.573 * 1e9

    def to_optimize(x):
        fd = 1.9e-24 * x[0]
        fs = 5.7e-20 * x[1]
        v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                         fs=fs,
                                                         fd=fd)
        return (v - ref_v)**2

    import scipy.optimize as optimization
    out = optimization.minimize(to_optimize, [1,1],
                                bounds=((0.01, 1), (0.01, 1)),
                                tol=1e-3)['x']
    fd = 1.9e-24 * out[0]
    fs = 5.7e-20 * out[1]
    v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                     fs=fs,
                                                     fd=fd,
                                                     write=True)
    d = dict(fs=fs, fd=fd)
    gdir.write_pickle(d, 'flowline_params')
    return gdir
Esempio n. 6
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    def test_invert_hef_nofs(self):

        # TODO: does not work on windows !!!
        if 'win' in sys.platform:
            print('test_invert_hef_nofs aborted due to windows.')
            return

        hef_file = get_demo_file('Hintereisferner.shp')
        rgidf = gpd.GeoDataFrame.from_file(hef_file)

        # loop because for some reason indexing wont work
        for index, entity in rgidf.iterrows():
            gdir = cfg.GlacierDir(entity, base_dir=self.testdir)
        gis.define_glacier_region(gdir, entity)
        gis.glacier_masks(gdir)
        centerlines.compute_centerlines(gdir)
        geometry.initialize_flowlines(gdir)
        geometry.catchment_area(gdir)
        geometry.catchment_width_geom(gdir)
        geometry.catchment_width_correction(gdir)
        climate.distribute_climate_data([gdir])
        climate.mu_candidates(gdir, div_id=0)
        hef_file = get_demo_file('mbdata_RGI40-11.00897.csv')
        mbdf = pd.read_csv(hef_file).set_index('YEAR')
        t_star, bias = climate.t_star_from_refmb(gdir, mbdf['ANNUAL_BALANCE'])
        t_star = t_star[-1]
        bias = bias[-1]
        climate.local_mustar_apparent_mb(gdir, t_star, bias)

        # OK. Values from Fischer and Kuhn 2013
        # Area: 8.55
        # meanH = 67+-7
        # Volume = 0.573+-0.063
        # maxH = 242+-13

        inversion.prepare_for_inversion(gdir)

        ref_v = 0.573 * 1e9

        def to_optimize(x):
            fd = 1.9e-24 * x[0]
            fs = 0.
            v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                             fs=fs,
                                                             fd=fd)
            return (v - ref_v)**2

        import scipy.optimize as optimization
        out = optimization.minimize(to_optimize, [1],
                                    bounds=((0.00001, 1000000),),
                                    tol=1e-3)['x']

        self.assertTrue(out[0] > 0.1)
        self.assertTrue(out[0] < 2)

        fd = 1.9e-24 * out[0]
        fs = 0.
        v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                         fs=fs,
                                                         fd=fd,
                                                         write=True)
        np.testing.assert_allclose(ref_v, v)

        lens = [len(gdir.read_pickle('centerlines', div_id=i)) for i in [1,2,3]]
        pid = np.argmax(lens) + 1
        cls = gdir.read_pickle('inversion_output', div_id=pid)
        fls = gdir.read_pickle('inversion_flowlines', div_id=pid)
        maxs = 0.
        for cl, fl in zip(cls, fls):
            thick = cl['thick']
            shape = cl['shape']
            self.assertTrue(np.all(np.isfinite(shape)))

            mywidths = np.sqrt(4*thick/shape) / gdir.grid.dx
            np.testing.assert_allclose(fl.widths, mywidths)

            _max = np.max(thick)
            if _max > maxs:
                maxs = _max

        np.testing.assert_allclose(242, maxs, atol=30)

        c0 = gdir.read_pickle('inversion_output', div_id=2)[-1]

        def to_optimize(x):
            fd = 1.9e-24 * x[0]
            fs = 5.7e-20 * x[1]
            v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                             fs=fs,
                                                             fd=fd)
            return (v - ref_v)**2

        import scipy.optimize as optimization
        out = optimization.minimize(to_optimize, [1, 1],
                                    bounds=((0.01, 1), (0.01, 1)),
                                    tol=1e-3)['x']

        self.assertTrue(out[0] > 0.1)
        self.assertTrue(out[1] > 0.1)
        self.assertTrue(out[0] < 1)
        self.assertTrue(out[1] < 1)

        fd = 1.9e-24 * out[0]
        fs = 5.7e-20 * out[1]
        v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                         fs=fs,
                                                         fd=fd,
                                                         write=True)
        np.testing.assert_allclose(ref_v, v)
Esempio n. 7
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    def test_invert_hef(self):

        hef_file = get_demo_file('Hintereisferner.shp')
        rgidf = gpd.GeoDataFrame.from_file(hef_file)

        # loop because for some reason indexing wont work
        for index, entity in rgidf.iterrows():
            gdir = cfg.GlacierDir(entity, base_dir=self.testdir)
        gis.define_glacier_region(gdir, entity)
        gis.glacier_masks(gdir)
        centerlines.compute_centerlines(gdir)
        geometry.initialize_flowlines(gdir)
        geometry.catchment_area(gdir)
        geometry.catchment_width_geom(gdir)
        geometry.catchment_width_correction(gdir)
        climate.distribute_climate_data([gdir])
        climate.mu_candidates(gdir, div_id=0)
        hef_file = get_demo_file('mbdata_RGI40-11.00897.csv')
        mbdf = pd.read_csv(hef_file).set_index('YEAR')
        t_star, bias = climate.t_star_from_refmb(gdir, mbdf['ANNUAL_BALANCE'])
        t_star = t_star[-1]
        bias = bias[-1]
        climate.local_mustar_apparent_mb(gdir, t_star, bias)

        # OK. Values from Fischer and Kuhn 2013
        # Area: 8.55
        # meanH = 67+-7
        # Volume = 0.573+-0.063
        # maxH = 242+-13
        inversion.prepare_for_inversion(gdir)

        lens = [len(gdir.read_pickle('centerlines', div_id=i)) for i in [1,2,3]]
        pid = np.argmax(lens) + 1

        # Check how many clips:
        cls = gdir.read_pickle('inversion_input', div_id=pid)
        nabove = 0
        maxs = 0.
        npoints = 0.
        for cl in cls:
            # Clip slope to avoid negative and small slopes
            slope = cl['slope_angle']
            nm = np.where(slope <  np.deg2rad(2.))
            nabove += len(nm[0])
            npoints += len(slope)
            _max = np.max(slope)
            if _max > maxs:
                maxs = _max

        self.assertTrue(nabove == 0)
        self.assertTrue(np.rad2deg(maxs) < 40.)

        ref_v = 0.573 * 1e9

        def to_optimize(x):
            fd = 1.9e-24 * x[0]
            fs = 5.7e-20 * x[1]
            v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                             fs=fs,
                                                             fd=fd)
            return (v - ref_v)**2

        import scipy.optimize as optimization
        out = optimization.minimize(to_optimize, [1, 1],
                                    bounds=((0.01, 10), (0.01, 10)),
                                    tol=1e-3)['x']

        self.assertTrue(out[0] > 0.1)
        self.assertTrue(out[1] > 0.1)
        self.assertTrue(out[0] < 1.1)
        self.assertTrue(out[1] < 1.1)
        fd = 1.9e-24 * out[0]
        fs = 5.7e-20 * out[1]
        v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                         fs=fs,
                                                         fd=fd,
                                                         write=True)
        np.testing.assert_allclose(ref_v, v)

        lens = [len(gdir.read_pickle('centerlines', div_id=i)) for i in [1,2,3]]
        pid = np.argmax(lens) + 1
        cls = gdir.read_pickle('inversion_output', div_id=pid)
        fls = gdir.read_pickle('inversion_flowlines', div_id=pid)
        maxs = 0.
        for cl, fl in zip(cls, fls):
            thick = cl['thick']
            shape = cl['shape']
            self.assertTrue(np.all(np.isfinite(shape)))

            mywidths = np.sqrt(4*thick/shape) / gdir.grid.dx
            np.testing.assert_allclose(fl.widths, mywidths)

            _max = np.max(thick)
            if _max > maxs:
                maxs = _max

        np.testing.assert_allclose(242, maxs, atol=13)

        # check that its not tooo sensitive to the dx
        cfg.params['flowline_dx'] = 1.
        geometry.initialize_flowlines(gdir)
        geometry.catchment_area(gdir)
        geometry.catchment_width_geom(gdir)
        geometry.catchment_width_correction(gdir)
        climate.distribute_climate_data([gdir])
        climate.mu_candidates(gdir, div_id=0)
        hef_file = get_demo_file('mbdata_RGI40-11.00897.csv')
        mbdf = pd.read_csv(hef_file).set_index('YEAR')
        t_star, bias = climate.t_star_from_refmb(gdir, mbdf['ANNUAL_BALANCE'])
        t_star = t_star[-1]
        bias = bias[-1]
        climate.local_mustar_apparent_mb(gdir, t_star, bias)
        inversion.prepare_for_inversion(gdir)
        v, _ = inversion.inversion_parabolic_point_slope(gdir,
                                                         fs=fs,
                                                         fd=fd,
                                                         write=True)

        np.testing.assert_allclose(ref_v, v, rtol=0.02)
        cls = gdir.read_pickle('inversion_output', div_id=pid)
        maxs = 0.
        for cl in cls:
            thick = cl['thick']
            self.assertTrue(np.all(np.isfinite(shape)))
            _max = np.max(thick)
            if _max > maxs:
                maxs = _max
        # The following test fails because max thick is larger.
        # I think that dx=2 is a minimum
        # np.testing.assert_allclose(242, maxs, atol=13)
        np.testing.assert_allclose(242, maxs, atol=42)
Esempio n. 8
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    def test_local_mustar(self):

        hef_file = get_demo_file('Hintereisferner.shp')
        rgidf = gpd.GeoDataFrame.from_file(hef_file)

        # loop because for some reason indexing wont work
        for index, entity in rgidf.iterrows():
            gdir = cfg.GlacierDir(entity, base_dir=self.testdir)
        gis.define_glacier_region(gdir, entity)
        gis.glacier_masks(gdir)
        centerlines.compute_centerlines(gdir)
        geometry.initialize_flowlines(gdir)
        geometry.catchment_area(gdir)
        geometry.catchment_width_geom(gdir)
        geometry.catchment_width_correction(gdir)
        climate.distribute_climate_data([gdir])
        climate.mu_candidates(gdir, div_id=0)

        hef_file = get_demo_file('mbdata_RGI40-11.00897.csv')
        mbdf = pd.read_csv(hef_file).set_index('YEAR')
        t_star, bias = climate.t_star_from_refmb(gdir, mbdf['ANNUAL_BALANCE'])

        t_star = t_star[-1]
        bias = bias[-1]

        climate.local_mustar_apparent_mb(gdir, t_star, bias)

        df = pd.read_csv(gdir.get_filepath('local_mustar', div_id=0))
        mu_ref = gdir.read_pickle('mu_candidates', div_id=0).loc[t_star]
        np.testing.assert_allclose(mu_ref, df['mu_star'][0], atol=1e-3)

        # Check for apparent mb to be zeros
        for i in [0] + list(gdir.divide_ids):
             fls = gdir.read_pickle('inversion_flowlines', div_id=i)
             tmb = 0.
             for fl in fls:
                 self.assertTrue(fl.apparent_mb.shape == fl.widths.shape)
                 tmb += np.sum(fl.apparent_mb * fl.widths)
             np.testing.assert_allclose(tmb, 0., atol=0.01)
             if i == 0: continue
             np.testing.assert_allclose(fls[-1].flux[-1], 0., atol=0.01)

        # ------ Look for gradient
        # which years to look at
        fls = gdir.read_pickle('inversion_flowlines', div_id=0)
        mb_on_h = np.array([])
        h = np.array([])
        for fl in fls:
            y, t, p = climate.mb_yearly_climate_on_height(gdir, fl.surface_h)
            selind = np.searchsorted(y, mbdf.index)
            t = np.mean(t[:, selind], axis=1)
            p = np.mean(p[:, selind], axis=1)
            mb_on_h = np.append(mb_on_h, p - mu_ref * t)
            h = np.append(h, fl.surface_h)
        dfg = pd.read_csv(get_demo_file('mbgrads_RGI40-11.00897.csv'),
                          index_col='ALTITUDE').mean(axis=1)
        # Take the altitudes below 3100 and fit a line
        dfg = dfg[dfg.index < 3100]
        pok = np.where(h < 3100)
        from scipy.stats import linregress
        slope_obs, _, _, _, _ = linregress(dfg.index, dfg.values)
        slope_our, _, _, _, _ = linregress(h[pok], mb_on_h[pok])
        np.testing.assert_allclose(slope_obs, slope_our, rtol=0.1)
Esempio n. 9
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    def test_yearly_mb_climate(self):

        hef_file = get_demo_file('Hintereisferner.shp')
        rgidf = gpd.GeoDataFrame.from_file(hef_file)

        # loop because for some reason indexing wont work
        gdirs = []
        for index, entity in rgidf.iterrows():
            gdir = cfg.GlacierDir(entity, base_dir=self.testdir)
            gis.define_glacier_region(gdir, entity)
            gdirs.append(gdir)
        climate.distribute_climate_data(gdirs)

        nc_r = netCDF4.Dataset(get_demo_file('histalp_merged_hef.nc'))
        ref_h = nc_r.variables['hgt'][1, 1]
        ref_p = nc_r.variables['prcp'][:, 1, 1]
        ref_p *= cfg.params['prcp_scaling_factor']
        ref_t = nc_r.variables['temp'][:, 1, 1]
        ref_t = np.where(ref_t < 0, 0, ref_t)
        nc_r.close()

        # NORMAL --------------------------------------------------------------
        hgts = np.array([ref_h, ref_h, -8000, 8000])
        years, temp, prcp = climate.mb_yearly_climate_on_height(gdir, hgts)

        ref_nt = 202
        self.assertTrue(len(years) == ref_nt)
        self.assertTrue(temp.shape == (4, ref_nt))
        self.assertTrue(prcp.shape == (4, ref_nt))

        yr = [1802, 1802]
        years, temp, prcp = climate.mb_yearly_climate_on_height(gdir, hgts,
                                                                year_range=yr)
        ref_nt = 1
        self.assertTrue(len(years) == ref_nt)
        self.assertTrue(years == 1802)
        self.assertTrue(temp.shape == (4, ref_nt))
        self.assertTrue(prcp.shape == (4, ref_nt))
        np.testing.assert_allclose(temp[0, :], np.sum(ref_t[0:12]))
        np.testing.assert_allclose(temp[0, :], temp[1, :])
        np.testing.assert_allclose(prcp[0, :], prcp[1, :])
        np.testing.assert_allclose(prcp[3, :], np.sum(ref_p[0:12]))
        np.testing.assert_allclose(prcp[2, :], np.sum(ref_p[0:12])*0)
        np.testing.assert_allclose(temp[3, :], np.sum(ref_p[0:12])*0)

        yr = [1803, 1804]
        years, temp, prcp = climate.mb_yearly_climate_on_height(gdir, hgts,
                                                                year_range=yr)
        ref_nt = 2
        self.assertTrue(len(years) == ref_nt)
        np.testing.assert_allclose(years, yr)
        self.assertTrue(temp.shape == (4, ref_nt))
        self.assertTrue(prcp.shape == (4, ref_nt))
        np.testing.assert_allclose(prcp[2, :], [0, 0])
        np.testing.assert_allclose(temp[3, :], [0, 0])

        # FLATTEN -------------------------------------------------------------
        hgts = np.array([ref_h, ref_h, -8000, 8000])
        years, temp, prcp = climate.mb_yearly_climate_on_height(gdir, hgts,
                                                                flatten=True)

        ref_nt = 202
        self.assertTrue(len(years) == ref_nt)
        self.assertTrue(temp.shape == (ref_nt,))
        self.assertTrue(prcp.shape == (ref_nt,))

        yr = [1802, 1802]
        hgts = np.array([ref_h])
        years, temp, prcp = climate.mb_yearly_climate_on_height(gdir, hgts,
                                                                year_range=yr,
                                                                flatten=True)
        ref_nt = 1
        self.assertTrue(len(years) == ref_nt)
        self.assertTrue(years == 1802)
        self.assertTrue(temp.shape == (ref_nt,))
        self.assertTrue(prcp.shape == (ref_nt,))
        np.testing.assert_allclose(temp[:], np.sum(ref_t[0:12]))

        yr = [1802, 1802]
        hgts = np.array([8000])
        years, temp, prcp = climate.mb_yearly_climate_on_height(gdir, hgts,
                                                                year_range=yr,
                                                                flatten=True)
        np.testing.assert_allclose(prcp[:], np.sum(ref_p[0:12]))