def check_fileset(hdr_file, schema_version=SCHEMA_VERSION_2):
lid = remove_extension(os.path.basename(hdr_file))
hdr_source = LocalFileSource(hdr_file)
adc_file = change_extension(hdr_file, 'adc')
adc_source = LocalFileSource(adc_file)
roi_source = LocalFileSource(change_extension(hdr_file, 'roi'))
try:
check_all(lid, hdr_source, adc_source, roi_source, schema_version=schema_version)
logging.info('%s PASS ALL' % lid)
except IntegrityException, e:
logging.info('%s FAIL %s' % (lid, e))
raise
def serve_image(width=None,imagename=None):
resolver = app.config[RESOLVER]
(hit,out) = (resolver[IMAGE].resolve(pid=imagename), None)
print hit
if hit is not None:
if hit.extension == 'json':
return Response(app.config[METADATA].json(imagename), mimetype='application/json')
fin = hit.value
(format, mimetype) = image_types(hit.filename)
if hit.product is None:
out = img_as_float(imread(fin,plugin='freeimage'))
if out is None:
if hit.product == 'rgb_illum_LR':
out = rgb_illum_LR(fin)
if hit.product == 'rgb_illum_L':
out = rgb_illum_L(fin)
if hit.product == 'rgb_illum_R':
out = rgb_illum_R(fin)
if hit.product == 'redcyan':
out = redcyan(fin)
if out is None:
hit = resolver[BIN].resolve(pid=imagename)
if hit is not None and hit.extension == 'json':
return Response(app.config[METADATA].json_bin(hit.bin_lid), mimetype='application/json')
hit = resolver[PID].resolve(pid=imagename)
(format, mimetype) = image_types(hit.filename)
if hit is None:
abort(404)
fin = resolver[IMAGE].resolve(pid=change_extension(hit.imagename,'tif')).value
if hit.product == 'redcyan':
out = redcyan(fin,pattern='rggb')
if out is not None:
if width is not None:
(h,w) = (out.shape[0], out.shape[1])
height = int(1. * width / w * h) #int((width/float(w)) * h)
out = resize(out,(height,width))
img = Image.fromarray((out * 255).astype('uint8'))
return image_response(img, format, mimetype)
# nothing worked
abort(404)
def as_tiff(imagename):
"""Change extension on imagename to 'tif'"""
return change_extension(imagename,'tif')
