def testConfigNoVersionPropertyParser(self, tmpdir):
cfg = tmpdir.join("test-noversion.properties")
s = "omero.version=5.6.1\na.1=a\nomero.db.version=5.4.0"
cfg.write(s)
pp = PropertyParser()
props = pp.parse_file(str(cfg))
# Fails, the last two properties are parsed as one:
# 'd.e' = 'line1line2f.g=\\n'
assert len(props) == 2
assert props[0].key == 'a.1'
assert props[0].val == 'a'
assert props[1].key == 'omero.db.version'
assert props[1].val == '5.4.0'
def _db_profile(self):
from omero.install.config_parser import PropertyParser
property_lines = self.ctx.get_config_property_lines(self.dir)
for property in PropertyParser().parse_lines(property_lines):
if property.key == 'omero.db.profile':
return property.val
raise KeyError('Configuration key not set: omero.db.profile')
def testConfigPropertyParser(self, tmpdir):
cfg = tmpdir.join("test.properties")
s = "a=1\nb.c=a b <!> c\nd.e=line1\\\nline2\nf.g=\\n\n"
cfg.write(s)
pp = PropertyParser()
props = pp.parse_file(str(cfg))
# Fails, the last two properties are parsed as one:
# 'd.e' = 'line1line2f.g=\\n'
assert len(props) == 4
assert props[0].key == 'a'
assert props[0].val == '1'
assert props[1].key == 'b.c'
assert props[1].val == 'a b <!> c'
assert props[2].key == 'd.e'
assert props[2].val == 'line1line2'
assert props[3].key == 'f.g'
assert props[3].val == '\\n'
def parse(self, args):
from omero.install.config_parser import PropertyParser
pp = PropertyParser()
if args.file:
args.file.close()
pp.parse_file(str(path(args.file.name).abspath()))
else:
pp.parse_lines(self.ctx.get_config_property_lines(self.dir))
# Parse PSQL profile file
for p in pp:
if p.key == "omero.db.profile":
psql_file = self.dir / "etc" / "profiles" / p.val
pp.parse_file(str(psql_file.abspath()))
break
# Parse OMERO.web configuration properties
if not args.no_web:
pp.parse_module('omeroweb.settings')
# Display options
if args.headers:
pp.print_headers()
elif args.keys:
pp.print_keys()
elif args.rst:
pp.print_rst()
else:
pp.print_defaults()
def get_mmp(sqlfile):
m = re.search(r'.*/?OMERO(\d+)\.(\d+)(\w*)__(\d+)', sqlfile)
if m is None:
return None
mmp = (int(m.group(1)), int(m.group(2)), m.group(3), int(m.group(4)))
return mmp
serverdir = path(sys.argv[1])
required = {'omero.db.version': None, 'omero.db.patch': None}
cli = CLI()
property_lines = cli.get_config_property_lines(serverdir)
for property in PropertyParser().parse_lines(property_lines):
if property.key in required:
required[property.key] = property.val
current_dbver = '%s__%s' % (required['omero.db.version'],
required['omero.db.patch'])
# Check dir
current_mmp = get_mmp(current_dbver)
if current_mmp is None:
current_version = None
directory = os.path.join(serverdir, 'sql', 'psql')
subfolders = [f.path for f in os.scandir(directory) if f.is_dir()]
for f in subfolders:
ver = os.path.basename(os.path.normpath(f))
ver = ver.replace("OMERO", "")
def parse(self, args):
if args.file:
args.file.close()
cfg = path(args.file.name)
else:
cfg = self.dir / "etc" / "omero.properties"
from omero.install.config_parser import PropertyParser
pp = PropertyParser()
pp.parse_file(str(cfg.abspath()))
# Parse PSQL profile file
for p in pp:
if p.key == "omero.db.profile":
psql_file = self.dir / "etc" / "profiles" / p.val
pp.parse_file(str(psql_file.abspath()))
break
# Parse OMERO.web configuration properties
if not args.no_web:
pp.parse_module('omeroweb.settings')
# Display options
if args.headers:
pp.print_headers()
elif args.keys:
pp.print_keys()
elif args.rst:
pp.print_rst()
else:
pp.print_defaults()
def parse(self, args):
if args.file:
args.file.close()
cfg = path(args.file.name)
else:
cfg = self.dir / "etc" / "omero.properties"
from omero.install.config_parser import PropertyParser
pp = PropertyParser()
pp.parse(str(cfg.abspath()))
if args.headers:
pp.print_headers()
elif args.keys:
pp.print_keys()
elif args.rst:
pp.print_rst()
else:
pp.print_defaults()