Esempio n. 1
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def well():
    """Basic Well for testing Color. Full test of Well below."""
    well = WellI()
    well.id = rlong(1)
    well.column = rint(0)
    well.row = rint(0)
    return well
Esempio n. 2
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def well():
    """Basic Well for testing Color. Full test of Well below."""
    well = WellI()
    well.id = rlong(1)
    well.column = rint(0)
    well.row = rint(0)
    return well
Esempio n. 3
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def screen_with_plates(screen):
    for plate_id in range(5, 7):
        o = PlateI()
        o.id = rlong(plate_id)
        o.name = rstring('plate_name_%d' % plate_id)
        o.description = rstring('plate_description_%d' % plate_id)
        o.columnNamingConvention = rstring('number')
        o.rowNamingConvention = rstring('letter')
        o.columns = rint(12)
        o.rows = rint(8)
        o.defaultSample = rint(0)
        o.externalIdentifier = rstring('external_identifier_%d' % plate_id)
        o.status = rstring('status_%d' % plate_id)
        o.wellOriginX = LengthI(0.1, UnitsLength.REFERENCEFRAME)
        o.wellOriginY = LengthI(1.1, UnitsLength.REFERENCEFRAME)
        screen.linkPlate(o)
        for well_id in range(7, 9):
            well = WellI()
            well.id = rlong(well_id)
            well.column = rint(2)
            well.row = rint(1)
            well.externalDescription = \
                rstring('external_description_%d' % well_id)
            well.externalIdentifier = \
                rstring('external_identifier_%d' % well_id)
            well.type = rstring('the_type')
            well.alpha = rint(0)
            well.red = rint(255)
            well.green = rint(0)
            well.blue = rint(0)
            well.status = rstring('the_status')
            o.addWell(well)
            plateacquisition = PlateAcquisitionI()
            plateacquisition.id = rlong(well_id)
            plateacquisition.name = rstring(
                'plateacquisition_name_%d' % well_id)
            plateacquisition.description = rstring(
                'plateacquisition_description_%d' % well_id)
            plateacquisition.maximumFieldCount = rint(1)
            plateacquisition.startTime = rtime(1L)
            plateacquisition.endTime = rtime(2L)
            for wellsample_id in range(9, 11):
                wellsample = WellSampleI()
                wellsample.setPlateAcquisition(plateacquisition)
                wellsample.id = rlong(wellsample_id)
                wellsample.posX = LengthI(1.0, UnitsLength.REFERENCEFRAME)
                wellsample.posY = LengthI(2.0, UnitsLength.REFERENCEFRAME)
                wellsample.timepoint = rtime(1L)
                wellsample.image = create_image(1L)
                well.addWellSample(wellsample)

    return screen
Esempio n. 4
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def screen_with_plates(screen):
    for plate_id in range(5, 7):
        o = PlateI()
        o.id = rlong(plate_id)
        o.name = rstring('plate_name_%d' % plate_id)
        o.description = rstring('plate_description_%d' % plate_id)
        o.columnNamingConvention = rstring('number')
        o.rowNamingConvention = rstring('letter')
        o.columns = rint(12)
        o.rows = rint(8)
        o.defaultSample = rint(0)
        o.externalIdentifier = rstring('external_identifier_%d' % plate_id)
        o.status = rstring('status_%d' % plate_id)
        o.wellOriginX = LengthI(0.1, UnitsLength.REFERENCEFRAME)
        o.wellOriginY = LengthI(1.1, UnitsLength.REFERENCEFRAME)
        screen.linkPlate(o)
        for well_id in range(7, 9):
            well = WellI()
            well.id = rlong(well_id)
            well.column = rint(2)
            well.row = rint(1)
            well.externalDescription = \
                rstring('external_description_%d' % well_id)
            well.externalIdentifier = \
                rstring('external_identifier_%d' % well_id)
            well.type = rstring('the_type')
            well.alpha = rint(0)
            well.red = rint(255)
            well.green = rint(0)
            well.blue = rint(0)
            well.status = rstring('the_status')
            o.addWell(well)
            plateacquisition = PlateAcquisitionI()
            plateacquisition.id = rlong(well_id)
            plateacquisition.name = rstring(
                'plateacquisition_name_%d' % well_id)
            plateacquisition.description = rstring(
                'plateacquisition_description_%d' % well_id)
            plateacquisition.maximumFieldCount = rint(1)
            plateacquisition.startTime = rtime(1L)
            plateacquisition.endTime = rtime(2L)
            for wellsample_id in range(9, 11):
                wellsample = WellSampleI()
                wellsample.setPlateAcquisition(plateacquisition)
                wellsample.id = rlong(wellsample_id)
                wellsample.posX = LengthI(1.0, UnitsLength.REFERENCEFRAME)
                wellsample.posY = LengthI(2.0, UnitsLength.REFERENCEFRAME)
                wellsample.timepoint = rtime(1L)
                wellsample.image = create_image(1L)
                well.addWellSample(wellsample)

    return screen