def test_single_camera_point_positions(self):
"""Point positions for a single camera case"""
num_cams = 1
# prepare MultimediaParams
cpar_file = b'testing_fodder/single_cam/parameters/ptv.par'
vpar_file = b'testing_fodder/single_cam/parameters/criteria.par'
cpar = ControlParams(num_cams)
cpar.read_control_par(cpar_file)
mult_params = cpar.get_multimedia_params()
vpar = VolumeParams()
vpar.read_volume_par(vpar_file)
ori_name = b'testing_fodder/single_cam/calibration/cam_1.tif.ori'
add_name = b'testing_fodder/single_cam/calibration/cam_1.tif.addpar'
calibs = []
# read calibration for each camera from files
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_name)
calibs.append(new_cal)
# 3d point
points = np.array([[1, 1, 0],
[-1, -1, 0]], dtype=float)
targs_plain = []
targs_jigged = []
jigg_amp = 0.4
new_plain_targ = image_coordinates(
points, calibs[0], mult_params)
targs_plain.append(new_plain_targ)
jigged_points = points - np.r_[0, jigg_amp, 0]
new_jigged_targs = image_coordinates(
jigged_points, calibs[0], mult_params)
targs_jigged.append(new_jigged_targs)
targs_plain = np.array(targs_plain).transpose(1,0,2)
targs_jigged = np.array(targs_jigged).transpose(1,0,2)
skew_dist_plain = point_positions(targs_plain, cpar, calibs, vpar)
skew_dist_jigged = point_positions(targs_jigged, cpar, calibs, vpar)
if np.any(np.linalg.norm(points - skew_dist_plain[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position.')
if np.any(np.linalg.norm(jigged_points - skew_dist_jigged[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position after jigging.')
def setUp(self):
self.input_ori_file_name = r'testing_fodder/calibration/cam1.tif.ori'
self.input_add_file_name = r'testing_fodder/calibration/cam2.tif.addpar'
self.control_file_name = r'testing_fodder/control_parameters/control.par'
self.calibration = Calibration()
self.calibration.from_file(self.input_ori_file_name,
self.input_add_file_name)
self.control = ControlParams(4)
self.control.read_control_par(self.control_file_name)
def setUp(self):
self.input_ori_file_name = b"testing_fodder/calibration/cam1.tif.ori"
self.input_add_file_name = b"testing_fodder/calibration/cam2.tif.addpar"
self.output_directory = b"testing_fodder/calibration/testing_output/"
# create a temporary output directory (will be deleted by the end of test)
if not os.path.exists(self.output_directory):
os.makedirs(self.output_directory)
# create an instance of Calibration wrapper class
self.cal = Calibration()
def setUp(self):
control_file_name = r'testing_fodder/corresp/control.par'
self.control = ControlParams(4)
self.control.read_control_par(control_file_name)
self.cal = Calibration()
self.cal.from_file("testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
self.orig_cal = Calibration()
self.orig_cal.from_file("testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
def test_single_camera_point_positions(self):
"""Point positions for a single camera case"""
num_cams = 1
# prepare MultimediaParams
cpar_file = b'testing_fodder/single_cam/parameters/ptv.par'
vpar_file = b'testing_fodder/single_cam/parameters/criteria.par'
cpar = ControlParams(num_cams)
cpar.read_control_par(cpar_file)
mult_params = cpar.get_multimedia_params()
vpar = VolumeParams()
vpar.read_volume_par(vpar_file)
ori_name = b'testing_fodder/single_cam/calibration/cam_1.tif.ori'
add_name = b'testing_fodder/single_cam/calibration/cam_1.tif.addpar'
calibs = []
# read calibration for each camera from files
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_name)
calibs.append(new_cal)
# 3d point
points = np.array([[1, 1, 0], [-1, -1, 0]], dtype=float)
targs_plain = []
targs_jigged = []
jigg_amp = 0.4
new_plain_targ = image_coordinates(points, calibs[0], mult_params)
targs_plain.append(new_plain_targ)
jigged_points = points - np.r_[0, jigg_amp, 0]
new_jigged_targs = image_coordinates(jigged_points, calibs[0],
mult_params)
targs_jigged.append(new_jigged_targs)
targs_plain = np.array(targs_plain).transpose(1, 0, 2)
targs_jigged = np.array(targs_jigged).transpose(1, 0, 2)
skew_dist_plain = point_positions(targs_plain, cpar, calibs, vpar)
skew_dist_jigged = point_positions(targs_jigged, cpar, calibs, vpar)
if np.any(np.linalg.norm(points - skew_dist_plain[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position.')
if np.any(
np.linalg.norm(jigged_points -
skew_dist_jigged[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position after jigging.')
def setUp(self):
self.input_ori_file_name = b'testing_fodder/calibration/cam1.tif.ori'
self.input_add_file_name = b'testing_fodder/calibration/cam2.tif.addpar'
self.control_file_name = b'testing_fodder/control_parameters/control.par'
self.volume_file_name = b'testing_fodder/corresp/criteria.par'
self.calibration = Calibration()
self.calibration.from_file(self.input_ori_file_name,
self.input_add_file_name)
self.control = ControlParams(4)
self.control.read_control_par(self.control_file_name)
self.vpar = VolumeParams()
self.vpar.read_volume_par(self.volume_file_name)
def setUp(self):
control_file_name = r'testing_fodder/corresp/control.par'
self.control = ControlParams(4)
self.control.read_control_par(control_file_name)
self.cal = Calibration()
self.cal.from_file(
"testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
self.orig_cal = Calibration()
self.orig_cal.from_file(
"testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
def test_full_corresp(self):
"""Full scene correspondences"""
cpar = ControlParams(4)
cpar.read_control_par(r"testing_fodder/corresp/control.par")
vpar = VolumeParams()
vpar.read_volume_par(r"testing_fodder/corresp/criteria.par")
# Cameras are at so high angles that opposing cameras don't see each
# other in the normal air-glass-water setting.
cpar.get_multimedia_params().set_layers([1.0001], [1.])
cpar.get_multimedia_params().set_n3(1.0001)
cals = []
img_pts = []
corrected = []
for c in xrange(4):
cal = Calibration()
cal.from_file(
"testing_fodder/calibration/sym_cam%d.tif.ori" % (c + 1),
"testing_fodder/calibration/cam1.tif.addpar")
cals.append(cal)
# Generate test targets.
targs = TargetArray(16)
for row, col in np.ndindex(4, 4):
targ_ix = row * 4 + col
# Avoid symmetric case:
if (c % 2):
targ_ix = 15 - targ_ix
targ = targs[targ_ix]
pos3d = 10 * np.array([[col, row, 0]], dtype=np.float64)
pos2d = image_coordinates(pos3d, cal,
cpar.get_multimedia_params())
targ.set_pos(convert_arr_metric_to_pixel(pos2d, cpar)[0])
targ.set_pnr(targ_ix)
targ.set_pixel_counts(25, 5, 5)
targ.set_sum_grey_value(10)
img_pts.append(targs)
mc = MatchedCoords(targs, cpar, cal)
corrected.append(mc)
sorted_pos, sorted_corresp, num_targs = correspondences(
img_pts, corrected, cals, vpar, cpar)
self.failUnlessEqual(num_targs, 16)
def test_full_corresp(self):
"""Full scene correspondences"""
print "about to dump core"
cpar = ControlParams(4)
cpar.read_control_par("testing_fodder/corresp/control.par")
vpar = VolumeParams()
vpar.read_volume_par("testing_fodder/corresp/criteria.par")
# Cameras are at so high angles that opposing cameras don't see each
# other in the normal air-glass-water setting.
cpar.get_multimedia_params().set_layers([1.0001], [1.])
cpar.get_multimedia_params().set_n3(1.0001)
cals = []
img_pts = []
corrected = []
for c in xrange(4):
cal = Calibration()
cal.from_file(
"testing_fodder/calibration/sym_cam%d.tif.ori" % (c + 1),
"testing_fodder/calibration/cam1.tif.addpar")
cals.append(cal)
# Generate test targets.
targs = TargetArray(16)
for row, col in np.ndindex(4, 4):
targ_ix = row*4 + col
# Avoid symmetric case:
if (c % 2):
targ_ix = 15 - targ_ix
targ = targs[targ_ix]
pos3d = 10*np.array([[col, row, 0]], dtype=np.float64)
pos2d = image_coordinates(
pos3d, cal, cpar.get_multimedia_params())
targ.set_pos(convert_arr_metric_to_pixel(pos2d, cpar)[0])
targ.set_pnr(targ_ix)
targ.set_pixel_counts(25, 5, 5)
targ.set_sum_grey_value(10)
img_pts.append(targs)
mc = MatchedCoords(targs, cpar, cal)
corrected.append(mc)
sorted_pos, sorted_corresp, num_targs = correspondences(
img_pts, corrected, cals, vpar, cpar)
self.failUnlessEqual(num_targs, 16)
def _button_init_guess_fired(self):
if self.need_reset:
self.reset_show_images()
self.need_reset = 0
self.cal_points = self._read_cal_points()
self.cals = []
for i_cam in range(self.n_cams):
cal = Calibration()
tmp = self.cpar.get_cal_img_base_name(i_cam)
cal.from_file(tmp + '.ori', tmp + '.addpar')
self.cals.append(cal)
for i_cam in range(self.n_cams):
self._project_cal_points(i_cam)
def test_dumbbell(self):
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17.5, 42, 0],
[-17.5, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = r'testing_fodder/dumbbell/cam{cam_num}.tif.ori'
add_file = r'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_file)
calibs.append(new_cal)
for cam_num, cam_cal in enumerate(calibs):
new_plain_targ = flat_image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
targs_plain = np.array(targs_plain).transpose(1,0,2)
# The cameras are not actually fully calibrated, so the result is not
# an exact 0. The test is that changing the expected distance changes
# the measure.
tf = dumbbell_target_func(targs_plain, self.control, calibs, 35., 0.)
self.assertAlmostEqual(tf, 7.14860, 5) # just a regression test
# As we check the db length, the measure increases...
tf_len = dumbbell_target_func(
targs_plain, self.control, calibs, 35., 1.)
self.assertTrue(tf_len > tf)
# ...but not as much as when giving the wrong length.
tf_too_long = dumbbell_target_func(
targs_plain, self.control, calibs, 25., 1.)
self.assertTrue(tf_too_long > tf_len > tf)
def test_dumbbell(self):
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17.5, 42, 0], [-17.5, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = 'testing_fodder/dumbbell/cam{cam_num}.tif.ori'
add_file = 'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name.encode(),
add_file=add_file.encode())
calibs.append(new_cal)
for cam_cal in calibs:
new_plain_targ = flat_image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
targs_plain = np.array(targs_plain).transpose(1, 0, 2)
# The cameras are not actually fully calibrated, so the result is not
# an exact 0. The test is that changing the expected distance changes
# the measure.
tf = dumbbell_target_func(targs_plain, self.control, calibs, 35., 0.)
self.assertAlmostEqual(tf, 7.14860, 5) # just a regression test
# As we check the db length, the measure increases...
tf_len = dumbbell_target_func(targs_plain, self.control, calibs, 35.,
1.)
self.assertTrue(tf_len > tf)
# ...but not as much as when giving the wrong length.
tf_too_long = dumbbell_target_func(targs_plain, self.control, calibs,
25., 1.)
self.assertTrue(tf_too_long > tf_len > tf)
def test_single_cam_corresp(self):
"""Single camera correspondence"""
cpar = ControlParams(1)
cpar.read_control_par("testing_fodder/single_cam/parameters/ptv.par")
vpar = VolumeParams()
vpar.read_volume_par(
"testing_fodder/single_cam/parameters/criteria.par")
# Cameras are at so high angles that opposing cameras don't see each
# other in the normal air-glass-water setting.
cpar.get_multimedia_params().set_layers([1.], [1.])
cpar.get_multimedia_params().set_n3(1.)
cals = []
img_pts = []
corrected = []
cal = Calibration()
cal.from_file(
"testing_fodder/single_cam/calibration/cam_1.tif.ori",
"testing_fodder/single_cam/calibration/cam_1.tif.addpar")
cals.append(cal)
# Generate test targets.
targs = TargetArray(9)
for row, col in np.ndindex(3, 3):
targ_ix = row * 3 + col
targ = targs[targ_ix]
pos3d = 10 * np.array([[col, row, 0]], dtype=np.float64)
pos2d = image_coordinates(pos3d, cal, cpar.get_multimedia_params())
targ.set_pos(convert_arr_metric_to_pixel(pos2d, cpar)[0])
targ.set_pnr(targ_ix)
targ.set_pixel_counts(25, 5, 5)
targ.set_sum_grey_value(10)
img_pts.append(targs)
mc = MatchedCoords(targs, cpar, cal)
corrected.append(mc)
sorted_pos, sorted_corresp, num_targs = correspondences(
img_pts, corrected, cals, vpar, cpar)
self.failUnlessEqual(num_targs, 9)
def test_single_cam_corresp(self):
"""Single camera correspondence"""
cpar = ControlParams(1)
cpar.read_control_par(b"testing_fodder/single_cam/parameters/ptv.par")
vpar = VolumeParams()
vpar.read_volume_par(b"testing_fodder/single_cam/parameters/criteria.par")
# Cameras are at so high angles that opposing cameras don't see each
# other in the normal air-glass-water setting.
cpar.get_multimedia_params().set_layers([1.], [1.])
cpar.get_multimedia_params().set_n3(1.)
cals = []
img_pts = []
corrected = []
cal = Calibration()
cal.from_file(
b"testing_fodder/single_cam/calibration/cam_1.tif.ori",
b"testing_fodder/single_cam/calibration/cam_1.tif.addpar")
cals.append(cal)
# Generate test targets.
targs = TargetArray(9)
for row, col in np.ndindex(3, 3):
targ_ix = row*3 + col
targ = targs[targ_ix]
pos3d = 10*np.array([[col, row, 0]], dtype=np.float64)
pos2d = image_coordinates(
pos3d, cal, cpar.get_multimedia_params())
targ.set_pos(convert_arr_metric_to_pixel(pos2d, cpar)[0])
targ.set_pnr(targ_ix)
targ.set_pixel_counts(25, 5, 5)
targ.set_sum_grey_value(10)
img_pts.append(targs)
mc = MatchedCoords(targs, cpar, cal)
corrected.append(mc)
_, _, num_targs = correspondences(
img_pts, corrected, cals, vpar, cpar)
self.failUnlessEqual(num_targs, 9)
def setUp(self):
self.input_ori_file_name = r'testing_fodder/calibration/cam1.tif.ori'
self.input_add_file_name = r'testing_fodder/calibration/cam2.tif.addpar'
self.control_file_name = r'testing_fodder/control_parameters/control.par'
self.calibration = Calibration()
self.calibration.from_file(
self.input_ori_file_name, self.input_add_file_name)
self.control = ControlParams(4)
self.control.read_control_par(self.control_file_name)
def test_instantiate(self):
"""Creating a MatchedCoords object"""
cal = Calibration()
cpar = ControlParams(4)
cal.from_file("testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam2.tif.addpar")
cpar.read_control_par("testing_fodder/corresp/control.par")
targs = read_targets("testing_fodder/frame/cam1.", 333)
mc = MatchedCoords(targs, cpar, cal)
pos, pnr = mc.as_arrays()
# x sorted?
self.failUnless(np.all(pos[1:, 0] > pos[:-1, 0]))
# Manually verified order for the loaded data:
np.testing.assert_array_equal(
pnr, np.r_[6, 11, 10, 8, 1, 4, 7, 0, 2, 9, 5, 3, 12])
def py_determination_proc_c(n_cams, sorted_pos, sorted_corresp, corrected):
""" Returns 3d positions """
# Control parameters
cpar = ControlParams(n_cams)
cpar.read_control_par(b'parameters/ptv.par')
# Volume parameters
vpar = VolumeParams()
vpar.read_volume_par(b'parameters/criteria.par')
cals =[]
for i_cam in range(n_cams):
cal = Calibration()
tmp = cpar.get_cal_img_base_name(i_cam)
cal.from_file(tmp + b'.ori', tmp + b'.addpar')
cals.append(cal)
# Distinction between quad/trip irrelevant here.
sorted_pos = np.concatenate(sorted_pos, axis=1)
sorted_corresp = np.concatenate(sorted_corresp, axis=1)
flat = np.array([corrected[i].get_by_pnrs(sorted_corresp[i]) \
for i in range(len(cals))])
pos, rcm = point_positions(
flat.transpose(1,0,2), cpar, cals, vpar)
if len(cals) < 4:
print_corresp = -1*np.ones((4,sorted_corresp.shape[1]))
print_corresp[:len(cals),:] = sorted_corresp
else:
print_corresp = sorted_corresp
# Save rt_is in a temporary file
fname = b"".join([default_naming['corres'],b'.123456789']) # hard-coded frame number
with open(fname, 'w') as rt_is:
rt_is.write(str(pos.shape[0]) + '\n')
for pix, pt in enumerate(pos):
pt_args = (pix + 1,) + tuple(pt) + tuple(print_corresp[:,pix])
rt_is.write("%4d %9.3f %9.3f %9.3f %4d %4d %4d %4d\n" % pt_args)
def setUp(self):
self.input_ori_file_name = "testing_fodder/calibration/cam1.tif.ori"
self.input_add_file_name = "testing_fodder/calibration/cam2.tif.addpar"
self.output_directory = "testing_fodder/calibration/testing_output/"
# create a temporary output directory (will be deleted by the end of test)
if not os.path.exists(self.output_directory):
os.makedirs(self.output_directory)
# create an instance of Calibration wrapper class
self.cal = Calibration()
def test_instantiate(self):
"""Creating a MatchedCoords object"""
cal = Calibration()
cpar = ControlParams(4)
cal.from_file(
b"testing_fodder/calibration/cam1.tif.ori",
b"testing_fodder/calibration/cam2.tif.addpar")
cpar.read_control_par(b"testing_fodder/corresp/control.par")
targs = read_targets("testing_fodder/frame/cam1.", 333)
mc = MatchedCoords(targs, cpar, cal)
pos, pnr = mc.as_arrays()
# x sorted?
self.failUnless(np.all(pos[1:,0] > pos[:-1,0]))
# Manually verified order for the loaded data:
np.testing.assert_array_equal(
pnr, np.r_[6, 11, 10, 8, 1, 4, 7, 0, 2, 9, 5, 3, 12])
def setUp(self):
with open("testing_fodder/track/conf.yaml") as f:
yaml_conf = yaml.load(f)
seq_cfg = yaml_conf['sequence']
cals = []
img_base = []
for cix, cam_spec in enumerate(yaml_conf['cameras']):
cam_spec.setdefault('addpar_file', None)
cal = Calibration()
cal.from_file(cam_spec['ori_file'], cam_spec['addpar_file'])
cals.append(cal)
img_base.append(seq_cfg['targets_template'].format(cam=cix + 1))
cpar = ControlParams(len(yaml_conf['cameras']), **yaml_conf['scene'])
vpar = VolumeParams(**yaml_conf['correspondences'])
tpar = TrackingParams(**yaml_conf['tracking'])
spar = SequenceParams(image_base=img_base,
frame_range=(seq_cfg['first'], seq_cfg['last']))
self.tracker = Tracker(cpar, vpar, tpar, spar, cals, framebuf_naming)
def setUp(self):
self.input_ori_file_name = b'testing_fodder/calibration/cam1.tif.ori'
self.input_add_file_name = b'testing_fodder/calibration/cam2.tif.addpar'
self.control_file_name = b'testing_fodder/control_parameters/control.par'
self.volume_file_name = b'testing_fodder/corresp/criteria.par'
self.calibration = Calibration()
self.calibration.from_file(
self.input_ori_file_name, self.input_add_file_name)
self.control = ControlParams(4)
self.control.read_control_par(self.control_file_name)
self.vpar = VolumeParams()
self.vpar.read_volume_par(self.volume_file_name)
def setUp(self):
with open("testing_fodder/track/conf.yaml") as f:
yaml_conf = yaml.load(f)
seq_cfg = yaml_conf['sequence']
cals = []
img_base = []
for cix, cam_spec in enumerate(yaml_conf['cameras']):
cam_spec.setdefault('addpar_file', None)
cal = Calibration()
cal.from_file(cam_spec['ori_file'], cam_spec['addpar_file'])
cals.append(cal)
img_base.append(seq_cfg['targets_template'].format(cam=cix + 1))
cpar = ControlParams(len(yaml_conf['cameras']), **yaml_conf['scene'])
vpar = VolumeParams(**yaml_conf['correspondences'])
tpar = TrackingParams(**yaml_conf['tracking'])
spar = SequenceParams(
image_base=img_base,
frame_range=(seq_cfg['first'], seq_cfg['last']))
self.tracker = Tracker(cpar, vpar, tpar, spar, cals, framebuf_naming)
def test_full_instantiate(self):
pos = numpy.r_[1., 3., 5.]
angs = numpy.r_[2., 4., 6.]
prim_point = pos * 3
rad_dist = pos * 4
decent = pos[:2] * 5
affine = decent * 1.5
glass = pos * 7
cal = Calibration(pos, angs, prim_point, rad_dist, decent, affine,
glass)
numpy.testing.assert_array_equal(pos, cal.get_pos())
numpy.testing.assert_array_equal(angs, cal.get_angles())
numpy.testing.assert_array_equal(prim_point, cal.get_primary_point())
numpy.testing.assert_array_equal(rad_dist, cal.get_radial_distortion())
numpy.testing.assert_array_equal(decent, cal.get_decentering())
numpy.testing.assert_array_equal(affine, cal.get_affine())
numpy.testing.assert_array_equal(glass, cal.get_glass_vec())
def test_two_cameras(self):
ori_tmpl = "testing_fodder/calibration/sym_cam{cam_num}.tif.ori"
add_file = "testing_fodder/calibration/cam1.tif.addpar"
orig_cal = Calibration()
orig_cal.from_file(ori_tmpl.format(cam_num=1).encode(), add_file.encode())
proj_cal = Calibration()
proj_cal.from_file(ori_tmpl.format(cam_num=3).encode(), add_file.encode())
# reorient cams:
orig_cal.set_angles(np.r_[0., -np.pi/4., 0.])
proj_cal.set_angles(np.r_[0., 3*np.pi/4., 0.])
cpar = ControlParams(4)
cpar.read_control_par(b"testing_fodder/corresp/control.par")
sens_size = cpar.get_image_size()
vpar = VolumeParams()
vpar.read_volume_par(b"testing_fodder/corresp/criteria.par")
vpar.set_Zmin_lay([-10, -10])
vpar.set_Zmax_lay([10, 10])
mult_params = cpar.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# Central point translates to central point because cameras point
# directly at each other.
mid = np.r_[sens_size]/2.
line = epipolar_curve(mid, orig_cal, proj_cal, 5, cpar, vpar)
self.failUnless(np.all(abs(line - mid) < 1e-6))
# An equatorial point draws a latitude.
line = epipolar_curve(
mid - np.r_[100., 0.], orig_cal, proj_cal, 5, cpar, vpar)
np.testing.assert_array_equal(np.argsort(line[:,0]), np.arange(5)[::-1])
self.failUnless(np.all(abs(line[:,1] - mid[1]) < 1e-6))
def py_determination_proc_c(n_cams, sorted_pos, sorted_corresp, corrected):
""" Returns 3d positions """
# Control parameters
cpar = ControlParams(n_cams)
cpar.read_control_par('parameters/ptv.par')
# Volume parameters
vpar = VolumeParams()
vpar.read_volume_par('parameters/criteria.par')
cals = []
for i_cam in xrange(n_cams):
cal = Calibration()
tmp = cpar.get_cal_img_base_name(i_cam)
cal.from_file(tmp + '.ori', tmp + '.addpar')
cals.append(cal)
# Distinction between quad/trip irrelevant here.
sorted_pos = np.concatenate(sorted_pos, axis=1)
sorted_corresp = np.concatenate(sorted_corresp, axis=1)
flat = np.array([corrected[i].get_by_pnrs(sorted_corresp[i]) \
for i in xrange(len(cals))])
pos, rcm = point_positions(flat.transpose(1, 0, 2), cpar, cals, vpar)
if len(cals) == 1: # single camera case
sorted_corresp = np.tile(sorted_corresp, (4, 1))
sorted_corresp[1:, :] = -1
# Save rt_is in a temporary file
frame = 123456789 # just a temporary workaround. todo: think how to write
with open(default_naming['corres'] + '.' + str(frame), 'w') as rt_is:
rt_is.write(str(pos.shape[0]) + '\n')
for pix, pt in enumerate(pos):
pt_args = (pix + 1, ) + tuple(pt) + tuple(sorted_corresp[:, pix])
rt_is.write("%4d %9.3f %9.3f %9.3f %4d %4d %4d %4d\n" % pt_args)
def py_start_proc_c(n_cams):
""" Read parameters """
# Control parameters
cpar = ControlParams(n_cams)
cpar.read_control_par(b'parameters/ptv.par')
# Sequence parameters
spar = SequenceParams(num_cams=n_cams)
spar.read_sequence_par(b'parameters/sequence.par', n_cams)
# Volume parameters
vpar = VolumeParams()
vpar.read_volume_par(b'parameters/criteria.par')
# Tracking parameters
track_par = TrackingParams()
track_par.read_track_par(b'parameters/track.par')
# Target parameters
tpar = TargetParams(n_cams)
tpar.read(b'parameters/targ_rec.par')
# Examine parameters, multiplane (single plane vs combined calibration)
epar = par.ExamineParams()
epar.read()
# Calibration parameters
cals = []
for i_cam in range(n_cams):
cal = Calibration()
tmp = cpar.get_cal_img_base_name(i_cam)
cal.from_file(tmp + b'.ori', tmp + b'.addpar')
cals.append(cal)
return cpar, spar, vpar, track_par, tpar, cals, epar
def test_full_instantiate(self):
pos = numpy.r_[1., 3., 5.]
angs = numpy.r_[2., 4., 6.]
prim_point = pos * 3
rad_dist = pos * 4
decent = pos[:2] * 5
affine = decent * 1.5
glass = pos * 7
cal = Calibration(pos, angs, prim_point, rad_dist, decent, affine,
glass)
numpy.testing.assert_array_equal(pos, cal.get_pos())
numpy.testing.assert_array_equal(angs, cal.get_angles())
numpy.testing.assert_array_equal(prim_point, cal.get_primary_point())
numpy.testing.assert_array_equal(rad_dist, cal.get_radial_distortion())
numpy.testing.assert_array_equal(decent, cal.get_decentering())
numpy.testing.assert_array_equal(affine, cal.get_affine())
numpy.testing.assert_array_equal(glass, cal.get_glass_vec())
def test_point_positions(self):
"""Point positions"""
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17, 42, 0], [17, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = r'testing_fodder/calibration/sym_cam{cam_num}.tif.ori'
add_file = r'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
targs_jigged = []
jigg_amp = 0.5
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_file)
calibs.append(new_cal)
for cam_num, cam_cal in enumerate(calibs):
new_plain_targ = image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
if (cam_num % 2) == 0:
jigged_points = points - np.r_[0, jigg_amp, 0]
else:
jigged_points = points + np.r_[0, jigg_amp, 0]
new_jigged_targs = image_coordinates(
jigged_points, cam_cal, self.control.get_multimedia_params())
targs_jigged.append(new_jigged_targs)
targs_plain = np.array(targs_plain).transpose(1, 0, 2)
targs_jigged = np.array(targs_jigged).transpose(1, 0, 2)
skew_dist_plain = point_positions(targs_plain, self.control, calibs)
skew_dist_jigged = point_positions(targs_jigged, self.control, calibs)
if np.any(skew_dist_plain[1] > 1e-10):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_plain[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_plain[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position.')
if np.any(skew_dist_jigged[1] > 0.7):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_jigged[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_jigged[0], axis=1) > 0.1):
self.fail('Rays converge on wrong position after jigging.')
class TestGradientDescent(unittest.TestCase):
# Based on the C tests in liboptv/tests/check_orientation.c
def setUp(self):
control_file_name = r'testing_fodder/corresp/control.par'
self.control = ControlParams(4)
self.control.read_control_par(control_file_name)
self.cal = Calibration()
self.cal.from_file("testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
self.orig_cal = Calibration()
self.orig_cal.from_file("testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
def test_external_calibration(self):
"""External calibration using clicked points."""
ref_pts = np.array([[-40., -25., 8.], [40., -15., 0.], [40., 15., 0.],
[40., 0., 8.]])
# Fake the image points by back-projection
targets = convert_arr_metric_to_pixel(
image_coordinates(ref_pts, self.cal,
self.control.get_multimedia_params()),
self.control)
# Jigg the fake detections to give raw_orient some challenge.
targets[:, 1] -= 0.1
self.assertTrue(
external_calibration(self.cal, ref_pts, targets, self.control))
np.testing.assert_array_almost_equal(self.cal.get_angles(),
self.orig_cal.get_angles(),
decimal=4)
np.testing.assert_array_almost_equal(self.cal.get_pos(),
self.orig_cal.get_pos(),
decimal=3)
def test_full_calibration(self):
ref_pts = np.array([
a.flatten() for a in np.meshgrid(np.r_[-60:-30:4j], np.r_[0:15:4j],
np.r_[0:15:4j])
]).T
# Fake the image points by back-projection
targets = convert_arr_metric_to_pixel(
image_coordinates(ref_pts, self.cal,
self.control.get_multimedia_params()),
self.control)
# Full calibration works with TargetArray objects, not NumPy.
target_array = TargetArray(len(targets))
for i in xrange(len(targets)):
target_array[i].set_pnr(i)
target_array[i].set_pos(targets[i])
# Perturb the calibration object, then compore result to original.
self.cal.set_pos(self.cal.get_pos() + np.r_[15., -15., 15.])
self.cal.set_angles(self.cal.get_angles() + np.r_[-.5, .5, -.5])
ret, used, err_est = full_calibration(self.cal, ref_pts, target_array,
self.control)
np.testing.assert_array_almost_equal(self.cal.get_angles(),
self.orig_cal.get_angles(),
decimal=4)
np.testing.assert_array_almost_equal(self.cal.get_pos(),
self.orig_cal.get_pos(),
decimal=3)
def setUp(self):
self.control = ControlParams(4)
self.calibration = Calibration()
class Test_Orientation(unittest.TestCase):
def setUp(self):
self.input_ori_file_name = r'testing_fodder/calibration/cam1.tif.ori'
self.input_add_file_name = r'testing_fodder/calibration/cam2.tif.addpar'
self.control_file_name = r'testing_fodder/control_parameters/control.par'
self.calibration = Calibration()
self.calibration.from_file(self.input_ori_file_name,
self.input_add_file_name)
self.control = ControlParams(4)
self.control.read_control_par(self.control_file_name)
def test_match_detection_to_ref(self):
"""Match detection to reference (sortgrid)"""
xyz_input = np.array([(10, 10, 10), (200, 200, 200), (600, 800, 100),
(20, 10, 2000), (30, 30, 30)],
dtype=float)
coords_count = len(xyz_input)
xy_img_pts_metric = image_coordinates(
xyz_input, self.calibration, self.control.get_multimedia_params())
xy_img_pts_pixel = convert_arr_metric_to_pixel(xy_img_pts_metric,
control=self.control)
# convert to TargetArray object
target_array = TargetArray(coords_count)
for i in range(coords_count):
target_array[i].set_pnr(i)
target_array[i].set_pos(
(xy_img_pts_pixel[i][0], xy_img_pts_pixel[i][1]))
# create randomized target array
indices = range(coords_count)
shuffled_indices = range(coords_count)
while indices == shuffled_indices:
random.shuffle(shuffled_indices)
rand_targ_array = TargetArray(coords_count)
for i in range(coords_count):
rand_targ_array[shuffled_indices[i]].set_pos(target_array[i].pos())
rand_targ_array[shuffled_indices[i]].set_pnr(target_array[i].pnr())
# match detection to reference
matched_target_array = match_detection_to_ref(cal=self.calibration,
ref_pts=xyz_input,
img_pts=rand_targ_array,
cparam=self.control)
# assert target array is as before
for i in range(coords_count):
if matched_target_array[i].pos() != target_array[i].pos() \
or matched_target_array[i].pnr() != target_array[i].pnr():
self.fail()
# pass ref_pts and img_pts with non-equal lengths
with self.assertRaises(ValueError):
match_detection_to_ref(cal=self.calibration,
ref_pts=xyz_input,
img_pts=TargetArray(coords_count - 1),
cparam=self.control)
def test_point_positions(self):
"""Point positions"""
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17, 42, 0], [17, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = r'testing_fodder/calibration/sym_cam{cam_num}.tif.ori'
add_file = r'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
targs_jigged = []
jigg_amp = 0.5
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_file)
calibs.append(new_cal)
for cam_num, cam_cal in enumerate(calibs):
new_plain_targ = image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
if (cam_num % 2) == 0:
jigged_points = points - np.r_[0, jigg_amp, 0]
else:
jigged_points = points + np.r_[0, jigg_amp, 0]
new_jigged_targs = image_coordinates(
jigged_points, cam_cal, self.control.get_multimedia_params())
targs_jigged.append(new_jigged_targs)
targs_plain = np.array(targs_plain).transpose(1, 0, 2)
targs_jigged = np.array(targs_jigged).transpose(1, 0, 2)
skew_dist_plain = point_positions(targs_plain, self.control, calibs)
skew_dist_jigged = point_positions(targs_jigged, self.control, calibs)
if np.any(skew_dist_plain[1] > 1e-10):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_plain[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_plain[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position.')
if np.any(skew_dist_jigged[1] > 0.7):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_jigged[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_jigged[0], axis=1) > 0.1):
self.fail('Rays converge on wrong position after jigging.')
def test_dumbbell(self):
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17.5, 42, 0], [-17.5, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = r'testing_fodder/dumbbell/cam{cam_num}.tif.ori'
add_file = r'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_file)
calibs.append(new_cal)
for cam_num, cam_cal in enumerate(calibs):
new_plain_targ = flat_image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
targs_plain = np.array(targs_plain).transpose(1, 0, 2)
# The cameras are not actually fully calibrated, so the result is not
# an exact 0. The test is that changing the expected distance changes
# the measure.
tf = dumbbell_target_func(targs_plain, self.control, calibs, 35., 0.)
self.assertAlmostEqual(tf, 7.14860, 5) # just a regression test
# As we check the db length, the measure increases...
tf_len = dumbbell_target_func(targs_plain, self.control, calibs, 35.,
1.)
self.assertTrue(tf_len > tf)
# ...but not as much as when giving the wrong length.
tf_too_long = dumbbell_target_func(targs_plain, self.control, calibs,
25., 1.)
self.assertTrue(tf_too_long > tf_len > tf)
class Test_Calibration(unittest.TestCase):
def setUp(self):
self.input_ori_file_name = "testing_fodder/calibration/cam1.tif.ori"
self.input_add_file_name = "testing_fodder/calibration/cam2.tif.addpar"
self.output_directory = "testing_fodder/calibration/testing_output/"
# create a temporary output directory (will be deleted by the end of test)
if not os.path.exists(self.output_directory):
os.makedirs(self.output_directory)
# create an instance of Calibration wrapper class
self.cal = Calibration()
def test_Calibration_instantiation(self):
"""Filling a calibration object by reading ori files"""
self.output_ori_file_name = self.output_directory + "output_ori"
self.output_add_file_name = self.output_directory + "output_add"
# Using a round-trip test.
self.cal.from_file(self.input_ori_file_name, self.input_add_file_name)
self.cal.write(self.output_ori_file_name, self.output_add_file_name)
self.assertTrue(filecmp.cmp(self.input_ori_file_name, self.output_ori_file_name, 0))
self.assertTrue(filecmp.cmp(self.input_add_file_name, self.output_add_file_name, 0))
def test_set_pos(self):
"""Set exterior position, only for admissible values"""
# test set_pos() by passing a numpy array of 3 elements
new_np = numpy.array([111.1111, 222.2222, 333.3333])
self.cal.set_pos(new_np)
# test getting position and assert that position is equal to set position
numpy.testing.assert_array_equal(new_np, self.cal.get_pos())
# assert set_pos() raises ValueError exception when given more or less than 3 elements
self.assertRaises(ValueError, self.cal.set_pos, numpy.array([1, 2, 3, 4]))
self.assertRaises(ValueError, self.cal.set_pos, numpy.array([1, 2]))
def test_set_angles(self):
"""set angles correctly"""
dmatrix_before = self.cal.get_rotation_matrix() # dmatrix before setting angles
angles_np = numpy.array([0.1111, 0.2222, 0.3333])
self.cal.set_angles(angles_np)
dmatrix_after = self.cal.get_rotation_matrix() # dmatrix after setting angles
numpy.testing.assert_array_equal(self.cal.get_angles(), angles_np)
# assert dmatrix was recalculated (before vs after)
self.assertFalse(numpy.array_equal(dmatrix_before, dmatrix_after))
self.assertRaises(ValueError, self.cal.set_angles, numpy.array([1, 2, 3, 4]))
self.assertRaises(ValueError, self.cal.set_angles, numpy.array([1, 2]))
def tearDown(self):
# remove the testing output directory and its files
shutil.rmtree(self.output_directory)
def test_set_primary(self):
"""Set primary point (interior) position, only for admissible values"""
new_pp = numpy.array([111.1111, 222.2222, 333.3333])
self.cal.set_primary_point(new_pp)
numpy.testing.assert_array_equal(new_pp, self.cal.get_primary_point())
self.assertRaises(ValueError, self.cal.set_primary_point, numpy.ones(4))
self.assertRaises(ValueError, self.cal.set_primary_point, numpy.ones(2))
def test_set_radial(self):
"""Set radial distortion, only for admissible values"""
new_rd = numpy.array([111.1111, 222.2222, 333.3333])
self.cal.set_radial_distortion(new_rd)
numpy.testing.assert_array_equal(new_rd,
self.cal.get_radial_distortion())
self.assertRaises(ValueError, self.cal.set_radial_distortion,
numpy.ones(4))
self.assertRaises(ValueError, self.cal.set_radial_distortion,
numpy.ones(2))
def test_set_decentering(self):
"""Set radial distortion, only for admissible values"""
new_de = numpy.array([111.1111, 222.2222])
self.cal.set_decentering(new_de)
numpy.testing.assert_array_equal(new_de, self.cal.get_decentering())
self.assertRaises(ValueError, self.cal.set_decentering, numpy.ones(3))
self.assertRaises(ValueError, self.cal.set_decentering, numpy.ones(1))
def test_set_glass(self):
"""Set glass vector, only for admissible values"""
new_gv = numpy.array([1., 2., 3.])
self.cal.set_glass_vec(new_gv)
numpy.testing.assert_array_equal(new_gv, self.cal.get_glass_vec())
self.assertRaises(ValueError, self.cal.set_glass_vec, numpy.ones(2))
self.assertRaises(ValueError, self.cal.set_glass_vec, numpy.ones(1))
class Test_image_coordinates(unittest.TestCase):
def setUp(self):
self.control = ControlParams(4)
self.calibration = Calibration()
def test_img_coord_typecheck(self):
with self.assertRaises(TypeError):
list = [[0 for x in range(3)] for x in range(10)
] # initialize a 10x3 list (but not numpy matrix)
flat_image_coordinates(list, self.control, out=None)
with self.assertRaises(TypeError):
flat_image_coordinates(np.empty((10, 2)),
self.calibration,
self.control.get_multimedia_params(),
output=None)
with self.assertRaises(TypeError):
image_coordinates(np.empty((10, 3)),
self.calibration,
self.control.get_multimedia_params(),
output=np.zeros((10, 3)))
with self.assertRaises(TypeError):
image_coordinates(np.zeros((10, 2)),
self.calibration,
self.control.get_multimedia_params(),
output=np.zeros((10, 2)))
def test_image_coord_regress(self):
self.calibration.set_pos(np.array([0, 0, 40]))
self.calibration.set_angles(np.array([0, 0, 0]))
self.calibration.set_primary_point(np.array([0, 0, 10]))
self.calibration.set_glass_vec(np.array([0, 0, 20]))
self.calibration.set_radial_distortion(np.array([0, 0, 0]))
self.calibration.set_decentering(np.array([0, 0]))
self.calibration.set_affine_trans(np.array([1, 0]))
self.mult = MultimediaParams(n1=1,
n2=np.array([1]),
n3=1,
d=np.array([1]))
input = np.array([[10., 5., -20.], [10., 5., -20.]]) # vec3d
output = np.zeros((2, 2))
x = 10. / 6.
y = x / 2.
correct_output = np.array([[x, y], [x, y]])
flat_image_coordinates(input=input,
cal=self.calibration,
mult_params=self.mult,
output=output)
np.testing.assert_array_equal(output, correct_output)
output = np.full((2, 2), 999.)
image_coordinates(input=input,
cal=self.calibration,
mult_params=self.mult,
output=output)
np.testing.assert_array_equal(output, correct_output)
def test_point_positions(self):
"""Point positions"""
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17, 42, 0],
[17, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = r'testing_fodder/calibration/sym_cam{cam_num}.tif.ori'
add_file = r'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
targs_jigged = []
jigg_amp = 0.5
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_file)
calibs.append(new_cal)
for cam_num, cam_cal in enumerate(calibs):
new_plain_targ = image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
if (cam_num % 2) == 0:
jigged_points = points - np.r_[0, jigg_amp, 0]
else:
jigged_points = points + np.r_[0, jigg_amp, 0]
new_jigged_targs = image_coordinates(
jigged_points, cam_cal, self.control.get_multimedia_params())
targs_jigged.append(new_jigged_targs)
targs_plain = np.array(targs_plain).transpose(1,0,2)
targs_jigged = np.array(targs_jigged).transpose(1,0,2)
skew_dist_plain = point_positions(targs_plain, self.control, calibs)
skew_dist_jigged = point_positions(targs_jigged, self.control, calibs)
if np.any(skew_dist_plain[1] > 1e-10):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_plain[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_plain[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position.')
if np.any(skew_dist_jigged[1] > 0.7):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_jigged[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_jigged[0], axis=1) > 0.1):
self.fail('Rays converge on wrong position after jigging.')
from optv.transforms import convert_arr_metric_to_pixel
num_cams = 3
num_frames = 5
velocity = 0.01
part_traject = np.zeros((num_frames, 3))
part_traject[:, 0] = np.r_[:num_frames] * velocity
# Find targets on each camera.
cpar = ControlParams(3)
cpar.read_control_par("testing_fodder/track/parameters/control_newpart.par")
targs = []
for cam in xrange(num_cams):
cal = Calibration()
cal.from_file("testing_fodder/cal/sym_cam%d.tif.ori" % (cam + 1),
"testing_fodder/cal/cam1.tif.addpar")
targs.append(
convert_arr_metric_to_pixel(
image_coordinates(part_traject, cal, cpar.get_multimedia_params()),
cpar))
for frame in xrange(num_frames):
# write 3D positions:
with open("testing_fodder/track/res_orig/particles.%d" % (frame + 1),
"w") as outfile:
# Note correspondence to the single target in each frame.
outfile.writelines([
str(1) + "\n",
"{:5d}{:10.3f}{:10.3f}{:10.3f}{:5d}{:5d}{:5d}{:5d}\n".format(
class Test_Orientation(unittest.TestCase):
def setUp(self):
self.input_ori_file_name = r'testing_fodder/calibration/cam1.tif.ori'
self.input_add_file_name = r'testing_fodder/calibration/cam2.tif.addpar'
self.control_file_name = r'testing_fodder/control_parameters/control.par'
self.calibration = Calibration()
self.calibration.from_file(
self.input_ori_file_name, self.input_add_file_name)
self.control = ControlParams(4)
self.control.read_control_par(self.control_file_name)
def test_match_detection_to_ref(self):
"""Match detection to reference (sortgrid)"""
xyz_input = np.array([(10, 10, 10),
(200, 200, 200),
(600, 800, 100),
(20, 10, 2000),
(30, 30, 30)], dtype=float)
coords_count = len(xyz_input)
xy_img_pts_metric = image_coordinates(
xyz_input, self.calibration, self.control.get_multimedia_params())
xy_img_pts_pixel = convert_arr_metric_to_pixel(
xy_img_pts_metric, control=self.control)
# convert to TargetArray object
target_array = TargetArray(coords_count)
for i in range(coords_count):
target_array[i].set_pnr(i)
target_array[i].set_pos(
(xy_img_pts_pixel[i][0], xy_img_pts_pixel[i][1]))
# create randomized target array
indices = range(coords_count)
shuffled_indices = range(coords_count)
while indices == shuffled_indices:
random.shuffle(shuffled_indices)
rand_targ_array = TargetArray(coords_count)
for i in range(coords_count):
rand_targ_array[shuffled_indices[i]].set_pos(target_array[i].pos())
rand_targ_array[shuffled_indices[i]].set_pnr(target_array[i].pnr())
# match detection to reference
matched_target_array = match_detection_to_ref(cal=self.calibration,
ref_pts=xyz_input,
img_pts=rand_targ_array,
cparam=self.control)
# assert target array is as before
for i in range(coords_count):
if matched_target_array[i].pos() != target_array[i].pos() \
or matched_target_array[i].pnr() != target_array[i].pnr():
self.fail()
# pass ref_pts and img_pts with non-equal lengths
with self.assertRaises(ValueError):
match_detection_to_ref(cal=self.calibration,
ref_pts=xyz_input,
img_pts=TargetArray(coords_count - 1),
cparam=self.control)
def test_point_positions(self):
"""Point positions"""
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17, 42, 0],
[17, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = r'testing_fodder/calibration/sym_cam{cam_num}.tif.ori'
add_file = r'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
targs_jigged = []
jigg_amp = 0.5
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_file)
calibs.append(new_cal)
for cam_num, cam_cal in enumerate(calibs):
new_plain_targ = image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
if (cam_num % 2) == 0:
jigged_points = points - np.r_[0, jigg_amp, 0]
else:
jigged_points = points + np.r_[0, jigg_amp, 0]
new_jigged_targs = image_coordinates(
jigged_points, cam_cal, self.control.get_multimedia_params())
targs_jigged.append(new_jigged_targs)
targs_plain = np.array(targs_plain).transpose(1,0,2)
targs_jigged = np.array(targs_jigged).transpose(1,0,2)
skew_dist_plain = point_positions(targs_plain, self.control, calibs)
skew_dist_jigged = point_positions(targs_jigged, self.control, calibs)
if np.any(skew_dist_plain[1] > 1e-10):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_plain[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_plain[0], axis=1) > 1e-6):
self.fail('Rays converge on wrong position.')
if np.any(skew_dist_jigged[1] > 0.7):
self.fail(('skew distance of target#{targ_num} ' \
+ 'is more than allowed').format(
targ_num=np.nonzero(skew_dist_jigged[1] > 1e-10)[0][0]))
if np.any(np.linalg.norm(points - skew_dist_jigged[0], axis=1) > 0.1):
self.fail('Rays converge on wrong position after jigging.')
def test_dumbbell(self):
# prepare MultimediaParams
mult_params = self.control.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# 3d point
points = np.array([[17.5, 42, 0],
[-17.5, 42, 0]], dtype=float)
num_cams = 4
ori_tmpl = r'testing_fodder/dumbbell/cam{cam_num}.tif.ori'
add_file = r'testing_fodder/calibration/cam1.tif.addpar'
calibs = []
targs_plain = []
# read calibration for each camera from files
for cam in range(num_cams):
ori_name = ori_tmpl.format(cam_num=cam + 1)
new_cal = Calibration()
new_cal.from_file(ori_file=ori_name, add_file=add_file)
calibs.append(new_cal)
for cam_num, cam_cal in enumerate(calibs):
new_plain_targ = flat_image_coordinates(
points, cam_cal, self.control.get_multimedia_params())
targs_plain.append(new_plain_targ)
targs_plain = np.array(targs_plain).transpose(1,0,2)
# The cameras are not actually fully calibrated, so the result is not
# an exact 0. The test is that changing the expected distance changes
# the measure.
tf = dumbbell_target_func(targs_plain, self.control, calibs, 35., 0.)
self.assertAlmostEqual(tf, 7.14860, 5) # just a regression test
# As we check the db length, the measure increases...
tf_len = dumbbell_target_func(
targs_plain, self.control, calibs, 35., 1.)
self.assertTrue(tf_len > tf)
# ...but not as much as when giving the wrong length.
tf_too_long = dumbbell_target_func(
targs_plain, self.control, calibs, 25., 1.)
self.assertTrue(tf_too_long > tf_len > tf)
class Test_transforms(unittest.TestCase):
def setUp(self):
self.input_control_par_file_name = b"testing_fodder/control_parameters/control.par"
self.control = ControlParams(4)
self.control.read_control_par(self.input_control_par_file_name)
self.input_ori_file_name = b"testing_fodder/calibration/cam1.tif.ori"
self.input_add_file_name = b"testing_fodder/calibration/cam2.tif.addpar"
self.calibration = Calibration()
self.calibration.from_file(self.input_ori_file_name, self.input_add_file_name)
def test_transforms_typecheck(self):
"""Transform bindings check types"""
# Assert TypeError is raised when passing a non (n,2) shaped numpy ndarray
with self.assertRaises(TypeError):
list = [[0 for x in range(2)] for x in range(10)] # initialize a 10x2 list (but not numpy matrix)
convert_arr_pixel_to_metric(list, self.control, out=None)
with self.assertRaises(TypeError):
convert_arr_pixel_to_metric(np.empty((10, 3)), self.control, out=None)
with self.assertRaises(TypeError):
convert_arr_metric_to_pixel(np.empty((2, 1)), self.control, out=None)
with self.assertRaises(TypeError):
convert_arr_metric_to_pixel(np.zeros((11, 2)), self.control, out=np.zeros((12, 2)))
def test_transforms_regress(self):
"""Transformed values are as before."""
input = np.full((3, 2), 100.)
output = np.zeros((3, 2))
correct_output_pixel_to_metric = [[-8181. , 6657.92],
[-8181. , 6657.92],
[-8181. , 6657.92]]
correct_output_metric_to_pixel= [[ 646.60066007, 505.81188119],
[ 646.60066007, 505.81188119],
[ 646.60066007, 505.81188119]]
# Test when passing an array for output
convert_arr_pixel_to_metric(input, self.control, out=output)
np.testing.assert_array_almost_equal(output, correct_output_pixel_to_metric,decimal=7)
output = np.zeros((3, 2))
convert_arr_metric_to_pixel(input, self.control, out=output)
np.testing.assert_array_almost_equal(output, correct_output_metric_to_pixel, decimal=7)
# Test when NOT passing an array for output
output=convert_arr_pixel_to_metric(input, self.control, out=None)
np.testing.assert_array_almost_equal(output, correct_output_pixel_to_metric,decimal=7)
output = np.zeros((3, 2))
output=convert_arr_metric_to_pixel(input, self.control, out=None)
np.testing.assert_array_almost_equal(output, correct_output_metric_to_pixel, decimal=7)
def test_transforms(self):
"""Transform in well-known setup gives precalculates results."""
cpar = ControlParams(1)
cpar.set_image_size((1280, 1000))
cpar.set_pixel_size((0.1, 0.1))
metric_pos = np.array([
[1., 1.],
[-10., 15.],
[20., -30.]
])
pixel_pos = np.array([
[650., 490.],
[540., 350.],
[840., 800.]
])
np.testing.assert_array_almost_equal(pixel_pos,
convert_arr_metric_to_pixel(metric_pos, cpar))
np.testing.assert_array_almost_equal(metric_pos,
convert_arr_pixel_to_metric(pixel_pos, cpar))
def test_brown_affine_types(self):
# Assert TypeError is raised when passing a non (n,2) shaped numpy ndarray
with self.assertRaises(TypeError):
list = [[0 for x in range(2)] for x in range(10)] # initialize a 10x2 list (but not numpy matrix)
correct_arr_brown_affine(list, self.calibration, out=None)
with self.assertRaises(TypeError):
correct_arr_brown_affine(np.empty((10, 3)), self.calibration, out=None)
with self.assertRaises(TypeError):
distort_arr_brown_affine(np.empty((2, 1)), self.calibration, out=None)
with self.assertRaises(TypeError):
distort_arr_brown_affine(np.zeros((11, 2)), self.calibration, out=np.zeros((12, 2)))
def test_brown_affine_regress(self):
input = np.full((3, 2), 100.)
output = np.zeros((3, 2))
correct_output_corr = [[ 100., 100.],
[ 100., 100.],
[ 100., 100.]]
correct_output_dist= [[ 100., 100.],
[ 100., 100.],
[ 100., 100.]]
# Test when passing an array for output
correct_arr_brown_affine(input, self.calibration, out=output)
np.testing.assert_array_almost_equal(output, correct_output_corr,decimal=7)
output = np.zeros((3, 2))
distort_arr_brown_affine(input, self.calibration, out=output)
np.testing.assert_array_almost_equal(output, correct_output_dist, decimal=7)
# Test when NOT passing an array for output
output=correct_arr_brown_affine(input, self.calibration, out=None)
np.testing.assert_array_almost_equal(output, correct_output_corr,decimal=7)
output = np.zeros((3, 2))
output=distort_arr_brown_affine(input, self.calibration, out=None)
np.testing.assert_array_almost_equal(output, correct_output_dist, decimal=7)
def test_brown_affine(self):
"""Distortion and correction of pixel coordinates."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
ref_pos = np.array([
[0.1, 0.1],
[1., -1.],
[-10., 10.]
])
# Perfect camera: distortion = identity.
distorted = distort_arr_brown_affine(ref_pos, cal)
np.testing.assert_array_almost_equal(distorted, ref_pos)
# Some small radial distortion:
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
self.failUnless(np.all(abs(distorted) > abs(ref_pos)))
def test_full_correction(self):
"""Round trip distortion/correction."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
# Note the last value is different than in test_brown_affine() because
# the iteration does not converge for a point too far out.
ref_pos = np.array([
[0.1, 0.1],
[1., -1.],
[-5., 5.]
])
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
corrected = distorted_to_flat(distorted, cal) # default tight tolerance
np.testing.assert_array_almost_equal(ref_pos, corrected, decimal=6)
def test_full_correction(self):
"""Round trip distortion/correction."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
# Note the last value is different than in test_brown_affine() because
# the iteration does not converge for a point too far out.
ref_pos = np.array([[0.1, 0.1], [1., -1.], [-5., 5.]])
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
corrected = distorted_to_flat(distorted,
cal) # default tight tolerance
np.testing.assert_array_almost_equal(ref_pos, corrected, decimal=6)
from optv.transforms import convert_arr_metric_to_pixel
num_cams = 3
num_frames = 5
velocity = 0.01
part_traject = np.zeros((num_frames,3))
part_traject[:,0] = np.r_[:num_frames]*velocity
# Find targets on each camera.
cpar = ControlParams(3)
cpar.read_control_par("testing_fodder/track/parameters/control_newpart.par")
targs = []
for cam in xrange(num_cams):
cal = Calibration()
cal.from_file(
"testing_fodder/cal/sym_cam%d.tif.ori" % (cam + 1),
"testing_fodder/cal/cam1.tif.addpar")
targs.append(convert_arr_metric_to_pixel(image_coordinates(
part_traject, cal, cpar.get_multimedia_params()), cpar))
for frame in xrange(num_frames):
# write 3D positions:
with open("testing_fodder/track/res_orig/particles.%d" % (frame + 1), "w") as outfile:
# Note correspondence to the single target in each frame.
outfile.writelines([
str(1) + "\n",
"{:5d}{:10.3f}{:10.3f}{:10.3f}{:5d}{:5d}{:5d}{:5d}\n".format(
1, part_traject[frame,0], part_traject[frame,1],
part_traject[frame,1], 0, 0, 0, 0)])
def run_batch(new_seq_first, new_seq_last):
""" this file runs inside exp_path, so the other names are
prescribed by the OpenPTV type of a folder:
/parameters
/img
/cal
/res
"""
# read the number of cameras
with open('parameters/ptv.par', 'r') as f:
n_cams = int(f.readline())
# Control parameters
cpar = ControlParams(n_cams)
cpar.read_control_par(b'parameters/ptv.par')
# Sequence parameters
spar = SequenceParams(num_cams=n_cams)
spar.read_sequence_par(b'parameters/sequence.par', n_cams)
spar.set_first(new_seq_first)
spar.set_last(new_seq_last)
# Volume parameters
vpar = VolumeParams()
vpar.read_volume_par(b'parameters/criteria.par')
# Tracking parameters
track_par = TrackingParams()
track_par.read_track_par(b'parameters/track.par')
# Target parameters
tpar = TargetParams()
tpar.read(b'parameters/targ_rec.par')
#
# Calibration parameters
cals = []
for i_cam in range(n_cams):
cal = Calibration()
tmp = cpar.get_cal_img_base_name(i_cam)
cal.from_file(tmp + b'.ori', tmp + b'.addpar')
cals.append(cal)
# sequence loop for all frames
for frame in range(new_seq_first, new_seq_last + 1):
print("processing frame %d" % frame)
detections = []
corrected = []
for i_cam in range(n_cams):
imname = spar.get_img_base_name(i_cam) + str(frame)
img = imread(imname)
hp = simple_highpass(img, cpar)
targs = target_recognition(hp, tpar, i_cam, cpar)
print(targs)
targs.sort_y()
detections.append(targs)
mc = MatchedCoords(targs, cpar, cals[i_cam])
pos, pnr = mc.as_arrays()
print(i_cam)
corrected.append(mc)
# if any([len(det) == 0 for det in detections]):
# return False
# Corresp. + positions.
sorted_pos, sorted_corresp, num_targs = correspondences(
detections, corrected, cals, vpar, cpar)
# Save targets only after they've been modified:
for i_cam in xrange(n_cams):
detections[i_cam].write(spar.get_img_base_name(i_cam), frame)
print("Frame " + str(frame) + " had " \
+ repr([s.shape[1] for s in sorted_pos]) + " correspondences.")
# Distinction between quad/trip irrelevant here.
sorted_pos = np.concatenate(sorted_pos, axis=1)
sorted_corresp = np.concatenate(sorted_corresp, axis=1)
flat = np.array([corrected[i].get_by_pnrs(sorted_corresp[i]) \
for i in xrange(len(cals))])
pos, rcm = point_positions(flat.transpose(1, 0, 2), cpar, cals, vpar)
if len(cals) < 4:
print_corresp = -1 * np.ones((4, sorted_corresp.shape[1]))
print_corresp[:len(cals), :] = sorted_corresp
else:
print_corresp = sorted_corresp
# Save rt_is
rt_is = open(default_naming['corres'] + '.' + str(frame), 'w')
rt_is.write(str(pos.shape[0]) + '\n')
for pix, pt in enumerate(pos):
pt_args = (pix + 1, ) + tuple(pt) + tuple(print_corresp[:, pix])
rt_is.write("%4d %9.3f %9.3f %9.3f %4d %4d %4d %4d\n" % pt_args)
rt_is.close()
# end of a sequence loop
tracker = Tracker(cpar, vpar, track_par, spar, cals, default_naming)
tracker.full_forward()
class TestGradientDescent(unittest.TestCase):
# Based on the C tests in liboptv/tests/check_orientation.c
def setUp(self):
control_file_name = r'testing_fodder/corresp/control.par'
self.control = ControlParams(4)
self.control.read_control_par(control_file_name)
self.cal = Calibration()
self.cal.from_file(
"testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
self.orig_cal = Calibration()
self.orig_cal.from_file(
"testing_fodder/calibration/cam1.tif.ori",
"testing_fodder/calibration/cam1.tif.addpar")
def test_external_calibration(self):
"""External calibration using clicked points."""
ref_pts = np.array([
[-40., -25., 8.],
[ 40., -15., 0.],
[ 40., 15., 0.],
[ 40., 0., 8.]])
# Fake the image points by back-projection
targets = convert_arr_metric_to_pixel(image_coordinates(
ref_pts, self.cal, self.control.get_multimedia_params()),
self.control)
# Jigg the fake detections to give raw_orient some challenge.
targets[:,1] -= 0.1
self.assertTrue(external_calibration(
self.cal, ref_pts, targets, self.control))
np.testing.assert_array_almost_equal(
self.cal.get_angles(), self.orig_cal.get_angles(),
decimal=4)
np.testing.assert_array_almost_equal(
self.cal.get_pos(), self.orig_cal.get_pos(),
decimal=3)
def test_full_calibration(self):
ref_pts = np.array([a.flatten() for a in np.meshgrid(
np.r_[-60:-30:4j], np.r_[0:15:4j], np.r_[0:15:4j])]).T
# Fake the image points by back-projection
targets = convert_arr_metric_to_pixel(image_coordinates(
ref_pts, self.cal, self.control.get_multimedia_params()),
self.control)
# Full calibration works with TargetArray objects, not NumPy.
target_array = TargetArray(len(targets))
for i in xrange(len(targets)):
target_array[i].set_pnr(i)
target_array[i].set_pos(targets[i])
# Perturb the calibration object, then compore result to original.
self.cal.set_pos(self.cal.get_pos() + np.r_[15., -15., 15.])
self.cal.set_angles(self.cal.get_angles() + np.r_[-.5, .5, -.5])
ret, used, err_est = full_calibration(
self.cal, ref_pts, target_array, self.control)
np.testing.assert_array_almost_equal(
self.cal.get_angles(), self.orig_cal.get_angles(),
decimal=4)
np.testing.assert_array_almost_equal(
self.cal.get_pos(), self.orig_cal.get_pos(),
decimal=3)
def setUp(self):
self.control = ControlParams(4)
self.calibration = Calibration()
class Test_Calibration(unittest.TestCase):
def setUp(self):
self.input_ori_file_name = b"testing_fodder/calibration/cam1.tif.ori"
self.input_add_file_name = b"testing_fodder/calibration/cam2.tif.addpar"
self.output_directory = b"testing_fodder/calibration/testing_output/"
# create a temporary output directory (will be deleted by the end of test)
if not os.path.exists(self.output_directory):
os.makedirs(self.output_directory)
# create an instance of Calibration wrapper class
self.cal = Calibration()
def test_full_instantiate(self):
pos = numpy.r_[1., 3., 5.]
angs = numpy.r_[2., 4., 6.]
prim_point = pos * 3
rad_dist = pos * 4
decent = pos[:2] * 5
affine = decent * 1.5
glass = pos * 7
cal = Calibration(pos, angs, prim_point, rad_dist, decent, affine,
glass)
numpy.testing.assert_array_equal(pos, cal.get_pos())
numpy.testing.assert_array_equal(angs, cal.get_angles())
numpy.testing.assert_array_equal(prim_point, cal.get_primary_point())
numpy.testing.assert_array_equal(rad_dist, cal.get_radial_distortion())
numpy.testing.assert_array_equal(decent, cal.get_decentering())
numpy.testing.assert_array_equal(affine, cal.get_affine())
numpy.testing.assert_array_equal(glass, cal.get_glass_vec())
def test_Calibration_instantiation(self):
"""Filling a calibration object by reading ori files"""
self.output_ori_file_name = self.output_directory + b"output_ori"
self.output_add_file_name = self.output_directory + b"output_add"
# Using a round-trip test.
self.cal.from_file(self.input_ori_file_name, self.input_add_file_name)
self.cal.write(self.output_ori_file_name, self.output_add_file_name)
self.assertTrue(filecmp.cmp(self.input_ori_file_name, self.output_ori_file_name, 0))
self.assertTrue(filecmp.cmp(self.input_add_file_name, self.output_add_file_name, 0))
def test_set_pos(self):
"""Set exterior position, only for admissible values"""
# test set_pos() by passing a numpy array of 3 elements
new_np = numpy.array([111.1111, 222.2222, 333.3333])
self.cal.set_pos(new_np)
# test getting position and assert that position is equal to set position
numpy.testing.assert_array_equal(new_np, self.cal.get_pos())
# assert set_pos() raises ValueError exception when given more or less than 3 elements
self.assertRaises(ValueError, self.cal.set_pos, numpy.array([1, 2, 3, 4]))
self.assertRaises(ValueError, self.cal.set_pos, numpy.array([1, 2]))
def test_set_angles(self):
"""set angles correctly"""
dmatrix_before = self.cal.get_rotation_matrix() # dmatrix before setting angles
angles_np = numpy.array([0.1111, 0.2222, 0.3333])
self.cal.set_angles(angles_np)
dmatrix_after = self.cal.get_rotation_matrix() # dmatrix after setting angles
numpy.testing.assert_array_equal(self.cal.get_angles(), angles_np)
# assert dmatrix was recalculated (before vs after)
self.assertFalse(numpy.array_equal(dmatrix_before, dmatrix_after))
self.assertRaises(ValueError, self.cal.set_angles, numpy.array([1, 2, 3, 4]))
self.assertRaises(ValueError, self.cal.set_angles, numpy.array([1, 2]))
def tearDown(self):
# remove the testing output directory and its files
shutil.rmtree(self.output_directory)
def test_set_primary(self):
"""Set primary point (interior) position, only for admissible values"""
new_pp = numpy.array([111.1111, 222.2222, 333.3333])
self.cal.set_primary_point(new_pp)
numpy.testing.assert_array_equal(new_pp, self.cal.get_primary_point())
self.assertRaises(ValueError, self.cal.set_primary_point, numpy.ones(4))
self.assertRaises(ValueError, self.cal.set_primary_point, numpy.ones(2))
def test_set_radial(self):
"""Set radial distortion, only for admissible values"""
new_rd = numpy.array([111.1111, 222.2222, 333.3333])
self.cal.set_radial_distortion(new_rd)
numpy.testing.assert_array_equal(new_rd,
self.cal.get_radial_distortion())
self.assertRaises(ValueError, self.cal.set_radial_distortion,
numpy.ones(4))
self.assertRaises(ValueError, self.cal.set_radial_distortion,
numpy.ones(2))
def test_set_decentering(self):
"""Set radial distortion, only for admissible values"""
new_de = numpy.array([111.1111, 222.2222])
self.cal.set_decentering(new_de)
numpy.testing.assert_array_equal(new_de, self.cal.get_decentering())
self.assertRaises(ValueError, self.cal.set_decentering, numpy.ones(3))
self.assertRaises(ValueError, self.cal.set_decentering, numpy.ones(1))
def test_set_glass(self):
"""Set glass vector, only for admissible values"""
new_gv = numpy.array([1., 2., 3.])
self.cal.set_glass_vec(new_gv)
numpy.testing.assert_array_equal(new_gv, self.cal.get_glass_vec())
self.assertRaises(ValueError, self.cal.set_glass_vec, numpy.ones(2))
self.assertRaises(ValueError, self.cal.set_glass_vec, numpy.ones(1))
class Test_image_coordinates(unittest.TestCase):
def setUp(self):
self.control = ControlParams(4)
self.calibration = Calibration()
def test_img_coord_typecheck(self):
with self.assertRaises(TypeError):
list = [[0 for x in range(3)] for x in range(10)] # initialize a 10x3 list (but not numpy matrix)
flat_image_coordinates(list, self.control, out=None)
with self.assertRaises(TypeError):
flat_image_coordinates(np.empty((10, 2)), self.calibration, self.control.get_multimedia_params(), output=None)
with self.assertRaises(TypeError):
image_coordinates(np.empty((10, 3)), self.calibration, self.control.get_multimedia_params(), output=np.zeros((10, 3)))
with self.assertRaises(TypeError):
image_coordinates(np.zeros((10, 2)), self.calibration, self.control.get_multimedia_params(), output=np.zeros((10, 2)))
def test_image_coord_regress(self):
self.calibration.set_pos(np.array([0, 0, 40]))
self.calibration.set_angles(np.array([0, 0, 0]))
self.calibration.set_primary_point(np.array([0, 0, 10]))
self.calibration.set_glass_vec(np.array([0, 0, 20]))
self.calibration.set_radial_distortion(np.array([0, 0, 0]))
self.calibration.set_decentering(np.array([0, 0]))
self.calibration.set_affine_trans(np.array([1, 0]))
self.mult = MultimediaParams(n1=1,
n2=np.array([1]),
n3=1,
d=np.array([1]))
input = np.array([[10., 5., -20.],
[10., 5., -20.]]) # vec3d
output = np.zeros((2, 2))
x = 10. / 6.
y = x / 2.
correct_output = np.array([[x, y],
[x, y]])
flat_image_coordinates(input=input, cal=self.calibration, mult_params=self.mult, output=output)
np.testing.assert_array_equal(output, correct_output)
output=np.full((2,2), 999.)
image_coordinates(input=input, cal=self.calibration, mult_params=self.mult, output=output)
np.testing.assert_array_equal(output, correct_output)
def test_brown_affine(self):
"""Distortion and correction of pixel coordinates."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
ref_pos = np.array([
[0.1, 0.1],
[1., -1.],
[-10., 10.]
])
# Perfect camera: distortion = identity.
distorted = distort_arr_brown_affine(ref_pos, cal)
np.testing.assert_array_almost_equal(distorted, ref_pos)
# Some small radial distortion:
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
self.failUnless(np.all(abs(distorted) > abs(ref_pos)))
class Test_transforms(unittest.TestCase):
def setUp(self):
self.input_control_par_file_name = "testing_fodder/control_parameters/control.par"
self.control = ControlParams(4)
self.control.read_control_par(self.input_control_par_file_name)
self.input_ori_file_name = "testing_fodder/calibration/cam1.tif.ori"
self.input_add_file_name = "testing_fodder/calibration/cam2.tif.addpar"
self.calibration = Calibration()
self.calibration.from_file(self.input_ori_file_name,
self.input_add_file_name)
def test_transforms_typecheck(self):
"""Transform bindings check types"""
# Assert TypeError is raised when passing a non (n,2) shaped numpy ndarray
with self.assertRaises(TypeError):
list = [[0 for x in range(2)] for x in range(10)
] # initialize a 10x2 list (but not numpy matrix)
convert_arr_pixel_to_metric(list, self.control, out=None)
with self.assertRaises(TypeError):
convert_arr_pixel_to_metric(np.empty((10, 3)),
self.control,
out=None)
with self.assertRaises(TypeError):
convert_arr_metric_to_pixel(np.empty((2, 1)),
self.control,
out=None)
with self.assertRaises(TypeError):
convert_arr_metric_to_pixel(np.zeros((11, 2)),
self.control,
out=np.zeros((12, 2)))
def test_transforms_regress(self):
"""Transformed values are as before."""
input = np.full((3, 2), 100.)
output = np.zeros((3, 2))
correct_output_pixel_to_metric = [[-8181., 6657.92], [-8181., 6657.92],
[-8181., 6657.92]]
correct_output_metric_to_pixel = [[646.60066007, 505.81188119],
[646.60066007, 505.81188119],
[646.60066007, 505.81188119]]
# Test when passing an array for output
convert_arr_pixel_to_metric(input, self.control, out=output)
np.testing.assert_array_almost_equal(output,
correct_output_pixel_to_metric,
decimal=7)
output = np.zeros((3, 2))
convert_arr_metric_to_pixel(input, self.control, out=output)
np.testing.assert_array_almost_equal(output,
correct_output_metric_to_pixel,
decimal=7)
# Test when NOT passing an array for output
output = convert_arr_pixel_to_metric(input, self.control, out=None)
np.testing.assert_array_almost_equal(output,
correct_output_pixel_to_metric,
decimal=7)
output = np.zeros((3, 2))
output = convert_arr_metric_to_pixel(input, self.control, out=None)
np.testing.assert_array_almost_equal(output,
correct_output_metric_to_pixel,
decimal=7)
def test_transforms(self):
"""Transform in well-known setup gives precalculates results."""
cpar = ControlParams(1)
cpar.set_image_size((1280, 1000))
cpar.set_pixel_size((0.1, 0.1))
metric_pos = np.array([[1., 1.], [-10., 15.], [20., -30.]])
pixel_pos = np.array([[650., 490.], [540., 350.], [840., 800.]])
np.testing.assert_array_almost_equal(
pixel_pos, convert_arr_metric_to_pixel(metric_pos, cpar))
np.testing.assert_array_almost_equal(
metric_pos, convert_arr_pixel_to_metric(pixel_pos, cpar))
def test_brown_affine_types(self):
# Assert TypeError is raised when passing a non (n,2) shaped numpy ndarray
with self.assertRaises(TypeError):
list = [[0 for x in range(2)] for x in range(10)
] # initialize a 10x2 list (but not numpy matrix)
correct_arr_brown_affine(list, self.calibration, out=None)
with self.assertRaises(TypeError):
correct_arr_brown_affine(np.empty((10, 3)),
self.calibration,
out=None)
with self.assertRaises(TypeError):
distort_arr_brown_affine(np.empty((2, 1)),
self.calibration,
out=None)
with self.assertRaises(TypeError):
distort_arr_brown_affine(np.zeros((11, 2)),
self.calibration,
out=np.zeros((12, 2)))
def test_brown_affine_regress(self):
input = np.full((3, 2), 100.)
output = np.zeros((3, 2))
correct_output_corr = [[100., 100.], [100., 100.], [100., 100.]]
correct_output_dist = [[100., 100.], [100., 100.], [100., 100.]]
# Test when passing an array for output
correct_arr_brown_affine(input, self.calibration, out=output)
np.testing.assert_array_almost_equal(output,
correct_output_corr,
decimal=7)
output = np.zeros((3, 2))
distort_arr_brown_affine(input, self.calibration, out=output)
np.testing.assert_array_almost_equal(output,
correct_output_dist,
decimal=7)
# Test when NOT passing an array for output
output = correct_arr_brown_affine(input, self.calibration, out=None)
np.testing.assert_array_almost_equal(output,
correct_output_corr,
decimal=7)
output = np.zeros((3, 2))
output = distort_arr_brown_affine(input, self.calibration, out=None)
np.testing.assert_array_almost_equal(output,
correct_output_dist,
decimal=7)
def test_brown_affine(self):
"""Distortion and correction of pixel coordinates."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
ref_pos = np.array([[0.1, 0.1], [1., -1.], [-10., 10.]])
# Perfect camera: distortion = identity.
distorted = distort_arr_brown_affine(ref_pos, cal)
np.testing.assert_array_almost_equal(distorted, ref_pos)
# Some small radial distortion:
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
self.failUnless(np.all(abs(distorted) > abs(ref_pos)))
def test_full_correction(self):
"""Round trip distortion/correction."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
# Note the last value is different than in test_brown_affine() because
# the iteration does not converge for a point too far out.
ref_pos = np.array([[0.1, 0.1], [1., -1.], [-5., 5.]])
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
corrected = distorted_to_flat(distorted,
cal) # default tight tolerance
np.testing.assert_array_almost_equal(ref_pos, corrected, decimal=6)
def test_two_cameras(self):
ori_tmpl = "testing_fodder/calibration/sym_cam{cam_num}.tif.ori"
add_file = "testing_fodder/calibration/cam1.tif.addpar"
orig_cal = Calibration()
orig_cal.from_file(
ori_tmpl.format(cam_num=1).encode(), add_file.encode())
proj_cal = Calibration()
proj_cal.from_file(
ori_tmpl.format(cam_num=3).encode(), add_file.encode())
# reorient cams:
orig_cal.set_angles(np.r_[0., -np.pi / 4., 0.])
proj_cal.set_angles(np.r_[0., 3 * np.pi / 4., 0.])
cpar = ControlParams(4)
cpar.read_control_par(b"testing_fodder/corresp/control.par")
sens_size = cpar.get_image_size()
vpar = VolumeParams()
vpar.read_volume_par(b"testing_fodder/corresp/criteria.par")
vpar.set_Zmin_lay([-10, -10])
vpar.set_Zmax_lay([10, 10])
mult_params = cpar.get_multimedia_params()
mult_params.set_n1(1.)
mult_params.set_layers(np.array([1.]), np.array([1.]))
mult_params.set_n3(1.)
# Central point translates to central point because cameras point
# directly at each other.
mid = np.r_[sens_size] / 2.
line = epipolar_curve(mid, orig_cal, proj_cal, 5, cpar, vpar)
self.failUnless(np.all(abs(line - mid) < 1e-6))
# An equatorial point draws a latitude.
line = epipolar_curve(mid - np.r_[100., 0.], orig_cal, proj_cal, 5,
cpar, vpar)
np.testing.assert_array_equal(np.argsort(line[:, 0]),
np.arange(5)[::-1])
self.failUnless(np.all(abs(line[:, 1] - mid[1]) < 1e-6))
def test_brown_affine(self):
"""Distortion and correction of pixel coordinates."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
ref_pos = np.array([[0.1, 0.1], [1., -1.], [-10., 10.]])
# Perfect camera: distortion = identity.
distorted = distort_arr_brown_affine(ref_pos, cal)
np.testing.assert_array_almost_equal(distorted, ref_pos)
# Some small radial distortion:
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
self.failUnless(np.all(abs(distorted) > abs(ref_pos)))
def test_full_correction(self):
"""Round trip distortion/correction."""
# This is all based on values from liboptv/tests/check_imgcoord.c
cal = Calibration()
cal.set_pos(np.r_[0., 0., 40.])
cal.set_angles(np.r_[0., 0., 0.])
cal.set_primary_point(np.r_[0., 0., 10.])
cal.set_glass_vec(np.r_[0., 0., 20.])
cal.set_radial_distortion(np.zeros(3))
cal.set_decentering(np.zeros(2))
cal.set_affine_trans(np.r_[1, 0])
# reference metric positions:
# Note the last value is different than in test_brown_affine() because
# the iteration does not converge for a point too far out.
ref_pos = np.array([
[0.1, 0.1],
[1., -1.],
[-5., 5.]
])
cal.set_radial_distortion(np.r_[0.001, 0., 0.])
distorted = distort_arr_brown_affine(ref_pos, cal)
corrected = distorted_to_flat(distorted, cal) # default tight tolerance
np.testing.assert_array_almost_equal(ref_pos, corrected, decimal=6)
