'input_type': 'burst3_oscillations',
'job_name': 'fig6_nodop',
'l_mean_rate_slices': ['mean_rate_slices'],
'l_hours': ['05', '01', '00'],
'l_minutes': ['00', '00', '05'],
'l_seconds': ['00', '00', '00'],
'labels': ['Only D1 no dop', 'D1,D2 no dop'],
'local_threads_milner': 40,
'local_threads_superm': 4,
'max_size': 20000.,
'module': module,
'nets': ['Net_0', 'Net_1'],
'other_scenario': True,
'path_code': default_params.HOME_CODE,
'path_results': get_path_logs(LOAD_MILNER_ON_SUPERMICRO, FILE_NAME),
'perturbation_list': [op.get()[5]],
'proportion_connected': [0.2] * NUM_NETS, #related to toal number fo runs
'p_sizes': [1.],
'p_subsamp': [1.],
'STN_amp_mod': STN_amp_mod,
}
if my_socket.determine_computer() == 'milner':
kw_add = {
'duration': [907., 100.0],
'laptime': 1007.0,
'res': 10,
'rep': 40,
'time_bin': 100.,
}
elif my_socket.determine_computer() == 'supermicro':
kw_add = {
pert_add_inhibition)
from core import my_socket
import config
import scripts_inhibition.base_inhibition_striatum as module
import oscillation_perturbations41_slow as op
import pprint
pp=pprint.pprint
FILE_NAME=__file__.split('/')[-1][0:-3]
FROM_DISK_0=0
NUM_NETS=1
ops=op.get()
NUM_RUNS=len(ops) #A run for each perturbation
num_sim=NUM_NETS*NUM_RUNS
dc=my_socket.determine_computer
CORES=40 if dc()=='milner' else 10
JOB_ADMIN=config.Ja_milner if dc()=='milner' else config.Ja_else
LOCAL_NUM_THREADS= 20 if dc()=='milner' else 10
WRAPPER_PROCESS=config.Wp_milner if dc()=='milner' else config.Wp_else
kwargs={
'Builder':Builder,
'cores':CORES,
'file_name':FILE_NAME,
'l_seconds': ['00', '00', '00'],
'labels': [
'D1,D2',
],
'local_threads_milner': 40,
'local_threads_superm': 4,
'max_size': 20000.,
'module': module,
'nets': ['Net_0'],
'op_pert_add': op_pert_add,
# 'oscillation_returbations_index':oscillation_returbations_index,
'other_scenario': True,
'path_code': default_params.HOME_CODE,
'path_results': get_path_logs(LOAD_MILNER_ON_SUPERMICRO, FILE_NAME),
'path_rate_runs': path_rate_runs,
'perturbation_list': [op.get()[oscillation_returbations_index]],
'proportion_connected': [0.2] * NUM_NETS, #related to toal number fo runs
'p_sizes': [1.],
'p_subsamp': [1.],
'STN_amp_mod': STN_amp_mod,
}
if my_socket.determine_computer() == 'milner':
kw_add = {
'duration': [907., 100.0],
'laptime': 1007.0,
'res': 10,
'rep': 40,
'time_bin': 100.,
}
elif my_socket.determine_computer() == 'supermicro':
path_rate_runs = get_path_rate_runs('simulate_inhibition_ZZZ41_slow/')
FILE_NAME = __file__.split('/')[-1][0:-3]
FROM_DISK_0 = int(sys.argv[1]) if len(sys.argv) > 1 else 0
LOAD_MILNER_ON_SUPERMICRO = False
NUM_NETS = 2
amp_base = [1., 1.05, 1.1] #numpy.arange(1.05, 1.2, 0.05)
freqs = [0.6] #numpy.arange(0.5, .8, 0.2)
n = len(amp_base)
m = len(freqs)
amp_base = list(numpy.array([m * [v] for v in amp_base]).ravel())
freqs = list(freqs) * n
STN_amp_mod = [3.] #range(1, 6, 2)
num_runs = len(freqs) * len(STN_amp_mod) * len(op.get())
num_sims = NUM_NETS * num_runs
dc = my_socket.determine_computer
CORES = 40 if dc() == 'milner' else 10
JOB_ADMIN = config.Ja_milner if dc() == 'milner' else config.Ja_else
LOCAL_NUM_THREADS = 20 if dc() == 'milner' else 10
WRAPPER_PROCESS = config.Wp_milner if dc() == 'milner' else config.Wp_else
kwargs = {
'amp_base': amp_base,
'Builder': Builder,
'cores': CORES,
'debug': False,
'do_runs': range(num_runs), #A run for each perturbation
'do_obj': False,
path_rate_runs=get_path_rate_runs('simulate_inhibition_ZZZ41_slow/')
FILE_NAME=__file__.split('/')[-1][0:-3]
FROM_DISK_0=int(sys.argv[1]) if len(sys.argv)>1 else 0
LOAD_MILNER_ON_SUPERMICRO=False
NUM_NETS=2
amp_base=[1.1] #numpy.arange(1.05, 1.2, 0.05)
freqs=numpy.arange(0.0, 2.0, 0.1)# [ 0.6] #numpy.arange(0.5, .8, 0.2)
n=len(amp_base)
m=len(freqs)
amp_base=list(numpy.array([m*[v] for v in amp_base]).ravel())
freqs=list(freqs)*n
STN_amp_mod=[3.]#range(1, 6, 2)
num_runs=len(freqs)*len(STN_amp_mod)*len(op.get())
num_sims=NUM_NETS*num_runs
kwargs={
'amp_base':amp_base,
'Builder':Builder,
'cores_milner':40*1,
'cores_superm':2,
'debug':False,
'do_runs':range(num_runs), #A run for each perturbation
'do_obj':False,
'external_input_mod':['EI','EA'],
import sys
import scripts_inhibition.base_oscillation_beta as module
import oscillation_perturbations41_slow as op
import oscillation_perturbations_nuclei2 as op_neuclei
import pprint
pp=pprint.pprint
path_rate_runs=get_path_rate_runs('fig_01_and_02_sim_inh/')
FILE_NAME=__file__.split('/')[-1][0:-3]
FROM_DISK_0=int(sys.argv[1]) if len(sys.argv)>1 else 0
LOAD_MILNER_ON_SUPERMICRO=False
ops=[op.get()[0]]
amp_base=[1.1] #numpy.arange(1.05, 1.2, 0.05)
freqs=[0.4] #numpy.arange(0.5, .8, 0.2)
#Total number of runs 18*2*2+18
STN_amp_mod=[3.]
NUM_NETS=2
NUM_RUNS=len(op_neuclei.get()) #A run for each perturbation
num_sim=NUM_NETS*NUM_RUNS
dc=my_socket.determine_computer
CORES=40 if dc()=='milner' else 10
JOB_ADMIN=config.Ja_milner if dc()=='milner' else config.Ja_else
LOCAL_NUM_THREADS= 20 if dc()=='milner' else 10
WRAPPER_PROCESS=config.Wp_milner if dc()=='milner' else config.Wp_else
kwargs={
'laptime':1000.0,
'local_threads_milner':40,
'local_threads_superm':4,
'max_size':20000.,
'module':module,
'nets':['Net_0'],
'op_pert_add':op_pert_add,
'other_scenario':True,
'path_code':default_params.HOME_CODE,
'path_results':get_path_logs(LOAD_MILNER_ON_SUPERMICRO,
FILE_NAME),
'perturbation_list':[op.get()[5]],
'proportion_connected':[0.2]*NUM_NETS, #related to toal number fo runs
'p_sizes':[
1.
],
'p_subsamp':[
1.
],
'res':10,
'rep':40,
'time_bin':100,
}
d_process_and_thread=par_process_and_thread(**kwargs)
kwargs.update(d_process_and_thread)
get_kwargs_list_indv_nets,
par_process_and_thread,
pert_add_inhibition)
from toolbox import my_socket
import config
import scripts_inhibition.base_inhibition_striatum as module
import oscillation_perturbations41_slow as op
import pprint
pp = pprint.pprint
FILE_NAME = __file__.split('/')[-1][0:-3]
FROM_DISK_0 = 0
NUM_NETS = 1
ops = op.get()[0:2]
NUM_RUNS = len(ops) #A run for each perturbation
num_sim = NUM_NETS * NUM_RUNS
JOB_ADMIN = config.Ja_milner if my_socket.determine_computer(
) == 'milner' else config.Ja_else
PROCESS_TYPE = 'milner' if my_socket.determine_computer(
) == 'milner' else 'else'
WRAPPER_PROCESS = config.Wp_milner if my_socket.determine_computer(
) == 'milner' else config.Wp_else
kwargs = {
'Builder': Builder,
'cores_mpi': 40 * 1,
'cores_shared_memory': 4,
'file_name': FILE_NAME,
