def setup_class(cls):
TestBase.setup_class()
ctx = cls.local_stack.getAuthenticatedDataStoreCoordinator().getContext()
proj = ctx.insertProject('ABF import', 'ABF import', DateTime())
exp = proj.insertExperiment('ABF experiment', DateTime())
cls.device_info = {u'amplifier.mode': u'I-clamp',
u'amplifier.channels.0.gain': 2.5,
u'amplifier.channels.1.gain': 3.5}
# TODO when we move to beta3
#exp.setEquipmentSetupFromMap(to_map(cls.device_info))
cls.src = ctx.insertSource("recording source", "source-id")
abf_file = 'fixtures/example1.abf'
logging.info("Importing file...")
cls.epoch_group = import_file(abf_file,
exp,
"amplifier",
[cls.src])[0] #single block
reader = AxonIO(filename=abf_file)
cls.block = reader.read()[0] # single block
def setup_class(cls):
TestBase.setup_class()
cls.ctx, cls.expt, cls.protocol = cls.make_experiment_fixture()
print("Importing example field data: {}".format(EXAMPLE_FIELD_DATA_CSV))
import_csv(cls.ctx,
container_uri=str(cls.expt.getURI().toString()),
protocol_uri=str(cls.protocol.getURI().toString()),
files=[EXAMPLE_FIELD_DATA_CSV])
def setup_class(cls):
TestBase.setup_class()
cls.ctx, cls.expt, cls.protocol = cls.make_experiment_fixture()
def setup_class(cls):
TestBase.setup_class()
cls.ctx, cls.expt, cls.protocol = cls.make_experiment_fixture()
