def test_init_with_neuron_objects(self):
n1 = Neuron(name="AVAL")
n2 = Neuron(name="PVCR")
try:
Connection(n1, n2)
except Exception:
self.fail("Shouldn't fail on Connection init")
def test_same_name_same_id(self):
"""
Test that two Neuron objects with the same name have the same
identifier. Saves us from having too many inserts of the same object.
"""
c = Neuron(name="boots")
c1 = Neuron(name="boots")
self.assertEqual(c.identifier, c1.identifier)
def test_adal_connections():
"""
See github issue openworm/owmeta#90
"""
for x in range(10):
adal = Neuron("ADAL")
post = Neuron()
Connection(pre_cell=adal, post_cell=post)
tuple(post.load())
def test_init(self):
"""Initialization with positional parameters"""
c = Connection(Neuron(name='AVAL'), Neuron(name='ADAR'), 3, 'send',
'Serotonin')
self.assertIsInstance(c.pre_cell(), Neuron)
self.assertIsInstance(c.post_cell(), Neuron)
self.assertEqual(c.number(), 3)
self.assertEqual(c.syntype(), 'send')
self.assertEqual(c.synclass(), 'Serotonin')
def setUp(self):
super(ExactNumberMatchTest, self).setUp()
fname = p(self.testdir, 'mycsv.csv')
text = 'PreCell;PostCell;send;3;neurotransmitter'
with open(fname, 'w') as f:
f.write(text)
self.nt_ds.file_name('mycsv.csv')
self.conn_ds.data_context(Connection)(pre_cell=Neuron('PreCell'),
post_cell=Neuron('PostCell'),
syntype='send',
number=3)
self.conn_ds.commit()
def test_adal_connections_property():
"""
See github issue openworm/owmeta#90
"""
for x in range(10):
adal = Neuron("ADAL")
tuple(adal.connection.get('either'))
def test_load_with_filter(self):
# Put the appropriate triples in. Try to load them
g = R.ConjunctiveGraph()
self.config['rdf.graph'] = g
for t in self.trips:
g.add(t)
c = Connection(pre_cell=Neuron(name="PVCR"), conf=self.config)
r = c.load()
for x in r:
self.assertIsInstance(x, Connection)
def set(self, ob, **kwargs):
self.real_neighbor(ob)
if isinstance(ob, NeuronClass):
ob_name = ob.name()
this_name = self.owner.name()
for x in ob.member.defined_values:
# Get the name for the neighbor
try:
n = x.name()
side = n[n.find(ob_name) + len(ob_name):]
name_here = this_name + side
this_neuron = Neuron(name_here)
self.owner.member(this_neuron)
this_neuron.neighbor(x, **kwargs)
except ValueError:
# XXX: could default to all-to-all semantics
print(
'Do not recoginze the membership of this neuron/neuron class',
ob)
elif isinstance(ob, Neuron):
for x in self.owner.member:
x.neighbor(ob)
import owmeta
from time import time
from owmeta.neuron import Neuron
owmeta.connect(configFile='owmeta/default.conf')
t0 = time()
print("Neurons:")
print(", ".join(sorted(Neuron().name.get())))
print("Receptors:")
print(", ".join(sorted(Neuron().receptor.get())))
tot = time() - t0
print("Took {} seconds".format(tot))
def test_neuron_load():
list(Neuron().load())
def test_neuron_receptors():
for x in range(30):
post = Neuron()
list(post.receptor())