def test_resolve_property_class_stored():
conf = Data()
conf.init()
ctxid = 'http://example.org/ctx'
ctx0 = Context(ctxid, conf=conf)
modname = ModelDBPropertyClassDescription.__module__
mod = ctx0(PythonModule)(name=modname)
cd = ctx0(ModelDBPropertyClassDescription)(name='ModelDB_test_property',
local_id='test_property',
display_name='Test Property',
module=mod)
ctx0.save()
ctx1 = Context(ctxid, conf=conf)
ctx1.stored(ModelDBPropertyClassDescription)(ident=cd.identifier)
assert issubclass(cd.resolve_class(), Property)
def test_resolve_property_attr_from_graph():
conf = Data()
conf.init()
ctxid = 'http://example.org/ctx'
ctx0 = Context(ctxid, conf=conf)
modname = ModelDBPropertyClassDescription.__module__
mod = ctx0(PythonModule)(name=modname)
ctx0(ModelDBPropertyClassDescription)(name='ModelDB_test_property',
local_id='test_property',
display_name='Test Property',
module=mod)
ctx0.save()
ctx1 = Context(ctxid, conf=conf)
ds = ctx1.stored(ModelDBDataSource)()
assert ds.test_property is ds.test_property
def test_stored(self):
'''
Test resolving a class when the relevant data are "stored" in a RDFLib graph
'''
ctxid = 'http://example.org/test'
ctx = Context(ident=ctxid, conf=self.TestConfig)
cname = self.__class__.__name__
mname = self.__class__.__module__
trips = [(pcd, PythonClassDescription.name.link, R.Literal(cname),
ctxid), (pcd, PythonClassDescription.module.link, pm, ctxid),
(pm, PythonModule.name.link, R.Literal(mname), ctxid),
(pm, R.RDF.type, PythonModule.rdf_type, ctxid)]
for t in trips:
ctx.rdf.add(t)
pcddo = ctx.stored(PythonClassDescription)(ident=pcd)
self.assertEqual(self.__class__, pcddo.resolve_class())
if len(lctx) == 0:
return frozenset()
else:
lctx = frozenset(ctxs) & lctx
if len(lctx) == 0:
return lctx
return frozenset() if lctx is None else lctx
qctx = Context()
qctx(Neuron)('AVAL').innexin('UNC-7')
ctxs = query_context(conn.conf['rdf.graph'], qctx)
for c in ctxs:
mqctx = Context(conf=conn.conf)
print('CONTEXT', c.identifier)
ev = mqctx.stored(Evidence)()
ev.supports(Context(ident=c.identifier, conf=conn.conf).rdf_object)
for x in ev.load():
ref = x.reference()
if isinstance(ref, Document):
print(ref)
print('AUTHOR:', ref.author())
print('URI:', ref.uri())
print('DOI:', ref.doi())
print('PMID:', ref.pmid())
print('WBID:', ref.wbid())
print()
elif isinstance(ref, Website):
print(ref)
print('TITLE:', ref.title())
print('URL:', ref.url())