read('inTrees.phy')
inTrees = var.trees
var.trees = []
read('stMcmcCons.nex')
read('mrpMajRuleConsTree.nex')
read('mrpStrictConsTree.nex')
var.trees[1].name = 'mrpMajRule'
var.trees[2].name = 'mrpStrict'
from p4.SuperTreeSupport import SuperTreeSupport
print("%20s %6s %6s %6s %6s %6s" % (' ', 'S', 'P', 'Q', 'R', 'V'))
for st in var.trees:
sts = SuperTreeSupport(st, inTrees)
sts.doSaveDecoratedTree = False
sts.decoratedFilename = 'mytree.nex'
sts.doSaveIndexTree = False
sts.indexFilename = 'mytreeIndex.nex'
sts.csvFilename = 'mytreeIndex.csv'
sts.doDrawTree = False
sts.verbose = 0
sts.superTreeSupport()
print("%20s %6.2f %6.2f %6.2f %6.2f %6.2f" %
(st.name, sts.S, sts.P, sts.Q, sts.R, sts.V))
read('inTrees.phy')
inTrees = var.trees
var.trees = []
read('stMcmcCons.nex')
read('mrpMajRuleConsTree.nex')
read('mrpStrictConsTree.nex')
var.trees[1].name = 'mrpMajRule'
var.trees[2].name = 'mrpStrict'
from p4.SuperTreeSupport import SuperTreeSupport
print "%20s %6s %6s %6s %6s %6s" % (' ', 'S', 'P', 'Q', 'R', 'V')
for st in var.trees:
sts = SuperTreeSupport(st, inTrees)
sts.doSaveDecoratedTree = False
sts.decoratedFilename='mytree.nex'
sts.doSaveIndexTree=False
sts.indexFilename='mytreeIndex.nex'
sts.csvFilename='mytreeIndex.csv'
sts.doDrawTree=False
sts.verbose=0
sts.superTreeSupport()
print "%20s %6.2f %6.2f %6.2f %6.2f %6.2f" % (st.name, sts.S, sts.P, sts.Q, sts.R, sts.V)
from p4.SuperTreeSupport import SuperTreeSupport
sts = SuperTreeSupport('supertree.nex', 'input.nex')
sts.doSaveDecoratedTree = False
sts.decoratedFilename='mytree.nex'
sts.verbose=2
sts.doDrawTree=True
sts.superTreeSupport()
from p4.SuperTreeSupport import SuperTreeSupport
sts = SuperTreeSupport('supertree.nex', 'input.nex')
sts.doSaveDecoratedTree = False
sts.decoratedFilename = 'mytree.nex'
sts.verbose = 2
sts.doDrawTree = True
sts.superTreeSupport()