def ephemeral(profile):
from pacu.util import identity
from pacu.core.model import fixture
l = manager.instance('log')
resource = identity.formattempfile('%s-db-engine-ephemeral.db')
engine = _create_sqlite_engine(profile.uri + resource, profile.echo.bool)
engine.__pacu_protect__ = profile.PROTECT.bool
s = get_scoped(engine)
if not Path(resource).is_file():
fixture.base.setup(s)
l.info('Tables of ephemeral db has initialized.')
return s
from pacu.profile import manager
# from pacu.core.io.scanbox.impl import ScanboxIO
opt = manager.instance('opt')
# def index_meta(mouse, day):
# io_paths = sorted(set(
# path.with_suffix('.io')
# for path in opt.scanbox_root.joinpath(mouse, day).ls('*.sbx')
# if path.is_file()))
# ios = map(ScanboxIO, io_paths)
# return dict(mouse=mouse, day=day, io_attrs_set=[r.attributes for r in ios])
#
# def index_day(mouse):
# days = sorted(set(path.name
# for path in opt.scanbox_root.joinpath(mouse).ls()
# if path.is_dir()))
# return dict(mouse=mouse, days=days)
#
# def index_mouse():
# mice = sorted(set(path.name
# for path in opt.scanbox_root.ls()
# if path.is_dir()))
# return dict(mice=mice)
def get_config(req):
return dict(root=opt.sparsenoise_root.str)
def ScanimageIOFetcher(year, month, day, mouse, image, session):
root = manager.instance('opt').scanimage_root
date = '{}.{:2}.{:2}'.format(year, month, day)
path = Path(root).joinpath(date, mouse, image)
return ScanimageIO(path).set_session(session)
def TrajectoryIOFetcher(recording, trial, session):
root = manager.instance('opt').trajectory_root
path = Path(root).joinpath(recording, trial)
return TrajectoryIO(path).set_session(session)
def unfold(self):
yield Path(self.data)
# print FSGraph(sbxpath).render().to_json()
# qwe = FSGraph(sbxpath.joinpath('JZ5', 'JZ5_000_003.mat')).render().to_json()
# print qwe.render().to_json()
# print qwe.catch()
# print qwe
# qwe = FSGraph(sbxpath.joinpath('fake-error-data.mat')).render().to_json()
# jz5 = '/Volumes/Users/ht/tmp/pysbx-data/JZ5/JZ5_000_003'
# f = FileGroup(jz5)
from pacu.profile import manager
sbxroot = manager.instance('opt').scanbox_root
sbxpath = Path(sbxroot)
# sbxpath = Path('/Volumes/Users/ht/tmp/pysbx-data')
# sbxpath = Path('/Volumes/Recordings/scanbox-jack/my4r_1_3')
def get(req, anchor, *hops, **kwargs):
action = kwargs.get('action')
# dest = path.cwd.joinpath(*hops)
dest = sbxpath.joinpath(*hops)
try:
graph = FSGraph(dest)
return graph.action(action) if action else graph.render().to_json()
except Exception as e:
print e
def ScanboxIOFetcher(mouse, day, io_name, workspace_id):
root = manager.instance('opt').scanbox_root
path = Path(root).joinpath(mouse, day, io_name)
return ScanboxIO(path).set_workspace(workspace_id).set_channel(0)