def test_gc_stats_subject_only(self):
gc_dict = gc_stats(
'data/rice_v6_setaria64/rice_v6_setaria64.cns_real.fasta', '>s')
self.assertEqual(
37.362637362637365, gc_dict[
's__6|24305193|24305378|scaffold_4|33902373|33902192|1e-51']
['gc'])
def test_gc_stats_query_only(self):
gc_dict = gc_stats(
'data/rice_v6_setaria64/rice_v6_setaria64.cns_real.fasta', '>q')
self.assertEqual(
38.17204301075269, gc_dict[
'q__6|24305193|24305378|scaffold_4|33902373|33902192|1e-51']
['gc'])
def test_gc_stats_subject_only(self):
gc_dict = gc_stats('data/rice_v6_setaria64/rice_v6_setaria64.cns_real.fasta', '>s')
self.assertEqual(37.362637362637365,gc_dict['s__6|24305193|24305378|scaffold_4|33902373|33902192|1e-51']['gc'])
def test_gc_stats_query_only(self):
gc_dict = gc_stats('data/rice_v6_setaria64/rice_v6_setaria64.cns_real.fasta','>q')
self.assertEqual(38.17204301075269,gc_dict['q__6|24305193|24305378|scaffold_4|33902373|33902192|1e-51']['gc'])
def test_gc_stats(self):
gc_dict = gc_stats(self.fasta,'>')
#print gc_dict['Os09g39960']
self.assertEqual(float(0), gc_dict['Os01g01100']['gc'])
self.assertEqual(48.431685273790535, gc_dict['Os09g39960']['gc'])
def test_gc_stats(self):
gc_dict = gc_stats(self.fasta, '>')
#print gc_dict['Os09g39960']
self.assertEqual(float(0), gc_dict['Os01g01100']['gc'])
self.assertEqual(48.431685273790535, gc_dict['Os09g39960']['gc'])