def show_available():
print "called select_available_tracks"
selected_genome = request.form['genome_select']
if selected_genome == '-- select genome --':
global config
return render_template('select.html', genomes=config['genomes'])
else:
trackdb_master = get_track_master(genome=request.form['genome_select'])
tracks = parse_trackDB.parse_master(trackdb_master)
return render_template('select.html', genomes=config['genomes'],
genome_path=trackdb_master,
genome=selected_genome, tracks=tracks,)
def update_tracks():
global config
print "Called update_tracks"
selected_genome = request.args.get('selected_genome')
selected_tracks = request.args.get('tracks')
outfile_name = os.path.join(config['base_dir'], selected_genome,
'trackDbs', request.args.get('outfile'))
print "selected_genome is: {}".format(selected_genome)
print "selected_tracks: {}".format(selected_tracks)
print "provided linkDb name: {}".format(outfile_name)
master_file = os.path.join(config['base_dir'], selected_genome, 'trackDbs',
'trackDb.txt.master')
print "base_dir in config: {}".format(config['base_dir'])
master_tracks = parse_trackDB.parse_master(track_master=master_file)
parse_trackDB.update_trackdbfiles(tracks=master_tracks,
visible_list=selected_tracks,
output=outfile_name,
genome=selected_genome)
# add_hub(url=config['hubUrl'], filename=outfile_name)
return render_template('select.html', genomes=config['genomes'])
