def test_invalid_sample_sheets(self):
"""
Given an invalid sample sheet, ensure the correct errors are included in the validation result
:return:
"""
sample_sheet = path.join(path_to_module, "invalid_sample_sheet",
"SampleList.csv")
with self.assertRaises(ValidationError) as context:
Parser.get_sequencing_run(sample_sheet)
validation_result = context.exception.validation_result
self.assertEqual(type(validation_result), model.ValidationResult)
for error in validation_result.error_list:
self.assertEqual(type(error), SampleSheetError)
def test_valid_run(self):
"""
Given a valid sample sheet, ensure a sequencing run is created
:return:
"""
sample_sheet = path.join(path_to_module, "fake_dir_data",
"SampleList.csv")
res = Parser.get_sequencing_run(sample_sheet)
self.assertEqual(type(res), model.SequencingRun)