def dtest_svm_training_pcss_error(self):
self.pcssConfig["input_annotation_file_name"] = self.getErrorInputFile(
"missingColumnsFile.txt")
self.runner = pcssTools.TrainingBenchmarkRunner(self.pcssConfig)
self.clearErrorFiles()
self.runner.execute()
self.checkErrorThrown("pcssError")
def dtest_svm_training_input_internal_error(self):
self.pcssConfig["input_annotation_file_name"] = os.path.join(
self.pcssConfig["home_test_directory"], "testInput",
"svmTrainingAnnotationInput.txt")
self.runner = pcssTools.TrainingBenchmarkRunner(self.pcssConfig)
self.pcssConfig["jackknife_fraction"] = "fake"
self.clearErrorFiles()
self.runner.execute()
self.checkErrorThrown("internalError")
def dtest_training_svm_runner(self):
#self.pcssConfig["attribute_file_name"] = os.path.join(self.pcssConfig["pcss_directory"], "data", "context", "trainingFileAttributes.txt")
self.pcssConfig["input_annotation_file_name"] = os.path.join(
self.pcssConfig["home_test_directory"], "testInput",
"svmTrainingAnnotationInput.txt")
self.runner = pcssTools.TrainingBenchmarkRunner(self.pcssConfig)
self.clearErrorFiles()
self.runner.internalConfig["make_random_test_set"] = False
self.runner.execute()
self.assertFalse(os.path.exists(self.runner.pdh.getPcssErrorFile()))
self.assertFalse(os.path.exists(
self.runner.pdh.getInternalErrorFile()))
def readTrainingAnnotationInputFile(self, fileName):
#self.setTrainingFileAttributes()
self.runner = pcssTools.TrainingBenchmarkRunner(self.pcssConfig)
self.reader = pcssIO.AnnotationFileReader(self.runner)
self.reader.readAnnotationFile(fileName)
import pcssTools import pcssCluster import configobj import sys import os configFileName = sys.argv[1] pcssConfig = configobj.ConfigObj(configFileName) #pcssConfig["attribute_file_name"] = os.path.join(pcssConfig["pcss_directory"], "data", "context", "svmTrainingAttributes.txt") runner = pcssTools.TrainingBenchmarkRunner(pcssConfig) runner.execute() runner = pcssTools.LeaveOneOutBenchmarkRunner(pcssConfig) runner.execute() runner = pcssTools.CompleteSvmRunner(pcssConfig) runner.execute()