def main(user_args):
key = user_args.key
namespace = user_args.namespace
if namespace is None:
namespace = default_namespace
log_level = user_args.log_level
#***************** Setup Logging **************
logger = logging.getLogger('service_final' + key)
level = logging.getLevelName(log_level)
logger.setLevel(level)
logFileHandle = logging.FileHandler(pds_log + 'Service.log')
formatter = logging.Formatter(
'%(asctime)s - %(name)s - %(levelname)s, %(message)s')
logFileHandle.setFormatter(formatter)
logger.addHandler(logFileHandle)
logger.info('Starting Final Process')
#************Set up REDIS Queues ****************
zipQueue = RedisQueue(key + '_ZIP', namespace)
loggyQueue = RedisQueue(key + '_loggy', namespace)
infoHash = RedisHash(key + '_info')
recipeQueue = RedisQueue(key + '_recipe', namespace)
errorHash = RedisHash(key + '_error')
DBQO = PDS_DBquery('JOBS')
if errorHash.HashCount() > 0:
root = ET.Element('errors')
test = errorHash.getKeys()
for item in test:
sub = ET.Element('error')
root.append(sub)
field1 = ET.SubElement(sub, 'file')
if isinstance(item, bytes):
item = item.decode('utf-8')
field1.text = item
Eval = errorHash.getError(item)
if isinstance(Eval, bytes):
Eval = Eval.decode('utf-8')
field2 = ET.SubElement(sub, 'message')
field2.text = Eval
tree = ET.ElementTree(root)
# testfile = 'test.xml'
# with open(testfile, "w") as fh:
fh = BytesIO()
tree.write(fh, encoding='utf-8', xml_declaration=True)
errorxml = str(fh.getvalue(), 'utf-8').replace("\n", "")
testval = DBQO.addErrors(key, errorxml)
if testval == 'Success':
logger.info('Error XML added to JOBS DB')
elif testval == 'Error':
logger.error('Adding Error XML to JOBS DB: Error')
print(errorxml)
Fdir = os.path.join(pow_map2_base, infoHash.Service(), key)
Wpath = os.path.join(workarea, key)
# Make final directory
if not os.path.exists(Fdir):
try:
os.makedirs(Fdir)
logger.info('Final Location Success: %s', Fdir)
except:
logger.error('Error Making Final Directory')
# Block to build job log file
outputLOG = Wpath + "/" + key + '.log'
logOBJ = open(outputLOG, "w")
logOBJ.write(" U.S. Geological Survey Cloud Processing Services\n")
logOBJ.write(" http://astrocloud.wr.usgs.gov\n\n")
if infoHash.Service() == 'POW':
logOBJ.write(" Processing On the Web(POW)\n\n")
logOBJ.write(" Processing Provided by ASTROGEOLOGY USGS Flagstaff\n")
logOBJ.write(" Contact Information: [email protected]\n\n")
logOBJ.write(
"____________________________________________________________________\n\n"
)
logOBJ.write("JOB INFORMATION\n\n")
logOBJ.write(" SERVICE: " + infoHash.Service() + "\n")
logOBJ.write(" JOB KEY: " + key + "\n")
logOBJ.write(" PROCESSING DATE: " +
datetime.datetime.now().strftime("%Y-%m-%d %H:%M") + "\n")
logOBJ.write(" ISIS VERSION: " + isis_version)
if infoHash.getStatus() == 'ERROR':
logOBJ.write(" JOB STATUS: " + infoHash.getStatus() +
" See Details Below\n")
else:
logOBJ.write(" JOB STATUS: " + infoHash.getStatus() + "\n")
logOBJ.write(" FILE COUNT: " + infoHash.getFileCount() + "\n\n")
logOBJ.write(
"_____________________________________________________________________\n\n"
)
logOBJ.write("PROCESSING INFORMATION\n\n")
for element in loggyQueue.ListGet():
procDICT = json.loads(element, object_pairs_hook=OrderedDict)
for infile in procDICT:
logOBJ.write(" IMAGE: " + infile + "\n")
for proc, _ in procDICT[infile].items():
logOBJ.write(" PROCESS: " + str(proc) + "\n")
for k, val in procDICT[infile][proc].items():
if k == 'status':
logOBJ.write(" STATUS: " + val +
"\n")
elif k == 'parameters':
logOBJ.write(" PARAMETERS: " + val +
"\n")
elif k == 'helplink':
logOBJ.write(" HELP LINK: " + val +
"\n\n")
elif k == 'error':
logOBJ.write(" ERROR: " + val +
"\n\n")
logOBJ.write("END-PROCESSING\n")
logOBJ.close()
#******** Block for to copy and zip files to final directory ******
map_file = os.path.join(Wpath, key + '.map')
Zfile = os.path.join(Wpath, key + '.zip')
final_file_list = zipQueue.ListGet()
final_file_list.append(outputLOG)
final_file_list.append(map_file)
logger.info('Making Zip File %s', Zfile)
with zipfile.ZipFile(Zfile, 'w') as out_zip:
for item in final_file_list:
try:
logger.info('File %s added to zip file: success', item)
out_zip.write(item, os.path.basename(item))
except:
logger.error('File %s NOT added to zip file', item)
logger.info('Copying output files to %s', Fdir)
for item in final_file_list:
try:
shutil.copyfile(item, os.path.join(Fdir, os.path.basename(item)))
logger.info('Copied file %s to download directory: Success', item)
except:
logger.error('File %s NOT COPIED to download directory', item)
logger.error(e)
try:
shutil.copy(Zfile, os.path.join(Fdir, os.path.basename(Zfile)))
logger.info('Copied zip file %s to download directory', Zfile)
except IOError as e:
logger.error(
'Error while attempting to copy zip file %s to download area',
Zfile)
logger.error(e)
#************** Clean up *******************
try:
shutil.rmtree(Wpath)
logger.info('Working Directory Removed: Success')
except:
logger.error('Working Directory NOT Removed')
DBQO2 = PDS_DBquery('JOBS')
DBQO2.setJobsFinished(key)
errorHash.RemoveAll()
infoHash.RemoveAll()
loggyQueue.RemoveAll()
zipQueue.RemoveAll()
recipeQueue.RemoveAll()
logger.info('Job %s is Complete', key)
def main(user_args):
key = user_args.key
namespace = user_args.namespace
log_level = user_args.log_level
#***************** Setup Logging **************
logger = logging.getLogger('service_final' + key)
level = logging.getLevelName(log_level)
logger.setLevel(level)
logFileHandle = logging.FileHandler(pds_log+'Service.log')
formatter = logging.Formatter(
'%(asctime)s - %(name)s - %(levelname)s, %(message)s')
logFileHandle.setFormatter(formatter)
logger.addHandler(logFileHandle)
logger.info('Starting Final Process')
#************Set up REDIS Queues ****************
zipQueue = RedisQueue(key + '_ZIP', namespace)
loggyQueue = RedisQueue(key + '_loggy', namespace)
infoHash = RedisHash(key + '_info')
recipeQueue = RedisQueue(key + '_recipe', namespace)
errorHash = RedisHash(key + '_error')
DBQO = PDS_DBquery('JOBS')
if errorHash.HashCount() > 0:
root = ET.Element('errors')
test = errorHash.getKeys()
for key in test:
sub = ET.Element('error')
root.append(sub)
field1 = ET.SubElement(sub, 'file')
field1.text = key
Eval = errorHash.getError(key)
field2 = ET.SubElement(sub, 'message')
field2.text = Eval
tree = ET.ElementTree(root)
# testfile = 'test.xml'
# with open(testfile, "w") as fh:
fh = BytesIO()
tree.write(fh, encoding='utf-8', xml_declaration=True)
testval = DBQO.addErrors(key , fh.getvalue())
if testval == 'Success':
logger.info('Error XML add to JOBS DB')
elif testval == 'Error':
logger.error('Addin Error XML to JOBS DB: Error')
print(fh.getvalue())
Fdir = pow_map2_base + infoHash.Service() + '/' + key
Wpath = scratch + key
# Make final directory
if not os.path.exists(Fdir):
try:
os.makedirs(Fdir)
logger.info('Final Location Success: %s', Fdir)
except:
logger.error('Error Making Final Directory')
# Block to build job log file
outputLOG = Wpath + "/" + key + '.log'
logOBJ = open(outputLOG, "w")
logOBJ.write(" U.S. Geological Survey Cloud Processing Services\n")
logOBJ.write(" http://astrocloud.wr.usgs.gov\n\n")
if infoHash.Service() == 'POW':
logOBJ.write(" Processing On the Web(POW)\n\n")
logOBJ.write(" Processing Provided by ASTROGEOLOGY USGS Flagstaff\n")
logOBJ.write(" Contact Information: [email protected]\n\n")
logOBJ.write(
"____________________________________________________________________\n\n")
logOBJ.write("JOB INFORMATION\n\n")
logOBJ.write(" SERVICE: " + infoHash.Service() + "\n")
logOBJ.write(" JOB KEY: " + key + "\n")
logOBJ.write(" PROCESSING DATE: " +
datetime.datetime.now().strftime("%Y-%m-%d %H:%M") + "\n")
logOBJ.write(" ISIS VERSION: " + isis_version)
if infoHash.getStatus() == 'ERROR':
logOBJ.write(" JOB STATUS: " +
infoHash.getStatus() + " See Details Below\n")
else:
logOBJ.write(" JOB STATUS: " + infoHash.getStatus() + "\n")
logOBJ.write(" FILE COUNT: " + infoHash.getFileCount() + "\n\n")
logOBJ.write(
"_____________________________________________________________________\n\n")
logOBJ.write("PROCESSING INFORMATION\n\n")
for element in loggyQueue.ListGet():
procDICT = json.loads(element, object_pairs_hook=OrderedDict)
for infile in procDICT:
logOBJ.write(" IMAGE: " + infile + "\n")
for proc, _ in procDICT[infile].items():
logOBJ.write(" PROCESS: " + str(proc) + "\n")
for k, val in procDICT[infile][proc].items():
if k == 'status':
logOBJ.write(
" STATUS: " + val + "\n")
elif k == 'command':
logOBJ.write(
" COMMAND: " + val + "\n")
elif k == 'helplink':
logOBJ.write(
" HELP LINK: " + val + "\n\n")
elif k == 'error':
logOBJ.write(
" ERROR: " + val + "\n\n")
logOBJ.write("END-PROCESSING\n")
logOBJ.close()
#******** Block for to copy and zip files to final directory ******
Zfile = Wpath + '/' + key + '.zip'
logger.info('Making Zip File %s', Zfile)
# log file stuff
try:
Lfile = key + '.log'
Zcmd = 'zip -j ' + Zfile + " -q " + outputLOG
process = subprocess.Popen(
Zcmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=True)
(stdout, stderr) = process.communicate()
# zOBJ.write(outputLOG, arcname=Lfile)
logger.info('Log file %s Added to Zip File: Success', Lfile)
logger.info('zip stdout: ' + stdout)
logger.info('zip stderr: ' + stderr)
except:
logger.error('Log File %s NOT Added to Zip File', Lfile)
try:
shutil.copyfile(outputLOG, Fdir + "/" + Lfile)
logger.info('Copied Log File %s to Final Area: Success', Lfile)
os.remove(outputLOG)
except IOError as e:
logger.error('Log File %s NOT COPIED to Final Area', Lfile)
logger.error(e)
# Add map file to zip
try:
map_file = Wpath + "/" + key + '.map'
Zcmd = 'zip -j ' + Zfile + " -q " + map_file
process = subprocess.Popen(
Zcmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=True)
(stdout, stderr) = process.communicate()
logger.info('Map file %s added to zip file: Success', map_file)
logger.info('zip stdout: ' + stdout)
logger.info('zip stderr: ' + stderr)
except:
logger.error('Map File %s NOT added to Zip File', map_file)
try:
shutil.copyfile(map_file, Fdir + "/" + key + '.map')
logger.info('Copied map file %s to final area: success', key + '.map')
except IOError as e:
logger.error('Map file %s NOT COPIED to final area', key + '.map')
logger.error(e)
# file stuff
for Lelement in zipQueue.ListGet():
Pfile = os.path.basename(Lelement)
# auxfile = os.path.basename(Lelement) + '.aux.xml'
auxfile = Wpath + '/' + os.path.basename(Lelement) + '.aux.xml'
try:
Zcmd = 'zip -j ' + Zfile + " -q " + Lelement
process = subprocess.Popen(
Zcmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=True)
(stdout, stderr) = process.communicate()
logger.info('File %s Added to Zip File: Success', Pfile)
if os.path.isfile(auxfile):
Zcmd = 'zip -j ' + Zfile + " -q " + auxfile
process = subprocess.Popen(
Zcmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE, shell=True)
(stdout, stderr) = process.communicate()
logger.info('File %s Added to Zip File: Success',
os.path.basename(Lelement) + '.aux.xml')
except:
logger.error('Error During Zip Operation')
try:
shutil.copyfile(Wpath + '/' + Pfile, Fdir + '/' + Pfile)
logger.info('Copy File %s : Success', Pfile)
os.remove(Wpath + "/" + Pfile)
if os.path.isfile(auxfile):
shutil.copyfile(auxfile, Fdir + '/' +
os.path.basename(Lelement) + '.aux.xml')
logger.info('Copy File %s : Success',
os.path.basename(Lelement) + '.aux.xml')
os.remove(auxfile)
except IOError as e:
logger.error('Error During File Copy Operation')
logger.error(e)
# zOBJ.close()
try:
shutil.copy(Zfile, Fdir + '/' + key + '.zip')
os.remove(Zfile)
logger.info('Zip File Copied to Final Directory')
except IOError as e:
logger.error('Error During Zip File Copy Operation')
logger.error(e)
#************** Clean up *******************
os.remove(Wpath + '/' + key + '.map')
os.remove(Wpath + '/' + key + '.sbatch')
try:
# os.rmdir(Wpath)
shutil.rmtree(Wpath)
logger.info('Working Directory Removed: Success')
except:
logger.error('Working Directory NOT Removed')
DBQO2 = PDS_DBquery('JOBS')
DBQO2.setJobsFinished(key )
infoHash.RemoveAll()
loggyQueue.RemoveAll()
zipQueue.RemoveAll()
recipeQueue.RemoveAll()
logger.info('Job %s is Complete', key)
