def test_subproject_activation_updates_sample_annotations_path(conf_file):
""" Subproject's sample annotation file pointer replaces original. """
with mock.patch("peppy.project.Project.parse_sample_sheet"):
p = Project(conf_file)
p.activate_subproject(_SP_NAME)
_, anns_file = os.path.split(p[METADATA_KEY][NAME_TABLE_ATTR])
assert _CHILD_ANNS == anns_file
def test_subproject_activation_updates_sample_annotations_path(conf_file):
""" Subproject's sample annotation file pointer replaces original. """
with mock.patch(SHEET_PARSE_FUNCPATH):
p = Project(conf_file)
p.activate_subproject(_SP_NAME)
_, anns_file = os.path.split(p[METADATA_KEY][NAME_TABLE_ATTR])
assert _CHILD_ANNS == anns_file
def test_relative_path_metadata_stasis(self, conf_file, eq_attr):
""" Key metadata paths are preserved with subproject that doesn't alter them. """
with mock.patch(SHEET_PARSE_FUNCPATH):
p = Project(conf_file)
main_path = getattr(p, eq_attr)
with mock.patch(SHEET_PARSE_FUNCPATH):
sub = p.activate_subproject(_SP_NAME)
assert main_path == getattr(sub, eq_attr)
def test_sp_act_preserves_nonoverlapping_entries(self, tmpdir, super_data,
sub_data, preserved):
""" Existing entries not in subproject should be kept as-is. """
sp = "sub"
meta_key = METADATA_KEY
conf_data = {
meta_key: super_data,
SUBPROJECTS_SECTION: {
sp: {
meta_key: sub_data
}
}
}
conf_file = tmpdir.join("conf.yaml").strpath
with open(conf_file, 'w') as f:
yaml.dump(conf_data, f)
p = Project(conf_file)
originals = [(k, p[meta_key][k]) for k in preserved]
print("INITIAL METADATA: {}".format(p.metadata))
p = p.activate_subproject(sp)
print("UPDATED METADATA: {}".format(p.metadata))
for k, v in originals:
assert v == p[meta_key][k]