def test_visualization_replicates(data_file_Isensee,
condition_file_Isensee,
vis_spec_file_Isensee_replicates,
simulation_file_Isensee):
plot_with_vis_spec(vis_spec_file_Isensee_replicates,
condition_file_Isensee,
data_file_Isensee, simulation_file_Isensee)
def test_visualization_minimal_data_file(data_file_Fujita_minimal,
condition_file_Fujita,
visu_file_Fujita_wo_dsid_wo_yvalues):
"""
Test visualization, with the case: data file only with mandatory columns
(optional columns are optional)
"""
plot_with_vis_spec(visu_file_Fujita_wo_dsid_wo_yvalues,
condition_file_Fujita, data_file_Fujita_minimal)
def test_visualization_empty_visu_file(data_file_Fujita,
condition_file_Fujita,
visu_file_Fujita_empty):
"""
Test: Empty visualization specification file should default to routine
for no file at all
"""
plot_with_vis_spec(visu_file_Fujita_empty, condition_file_Fujita,
data_file_Fujita)
def test_visualization_minimal_visu_file(data_file_Fujita,
condition_file_Fujita,
visu_file_Fujita_minimal):
"""
Test: visualization specification file only with mandatory column plotId
(optional columns are optional)
"""
plot_with_vis_spec(visu_file_Fujita_minimal, condition_file_Fujita,
data_file_Fujita)
def test_visualization_small_visu_file_w_datasetid(data_file_Fujita,
condition_file_Fujita,
visu_file_Fujita_small):
"""
Test: visualization specification file only with few columns in
particular datasetId
(optional columns are optional)
"""
plot_with_vis_spec(visu_file_Fujita_small, condition_file_Fujita,
data_file_Fujita)
def test_visualization_small_visu_file_wo_datasetid(
data_file_Fujita,
condition_file_Fujita,
visu_file_Fujita_wo_dsid_wo_yvalues):
"""
Test: visualization specification file only with few columns in
particular no datasetId column
(optional columns are optional)
"""
plot_with_vis_spec(visu_file_Fujita_wo_dsid_wo_yvalues,
condition_file_Fujita, data_file_Fujita)
def test_visualization_all_obs_with_diff_settings(
data_file_Fujita,
condition_file_Fujita,
visu_file_Fujita_all_obs_with_diff_settings):
"""
Test: visualization specification file only with few columns. In
particular, no datasetId column and no yValues column, but more than one
plot id. Additionally, having plot id different from 'plot\\d+' for the
case of vis_spec expansion is tested.
"""
plot_with_vis_spec(visu_file_Fujita_all_obs_with_diff_settings,
condition_file_Fujita, data_file_Fujita)
def test_visualization_with_vis_and_sim(data_file_Isensee,
condition_file_Isensee,
vis_spec_file_Isensee,
simulation_file_Isensee):
plot_with_vis_spec(vis_spec_file_Isensee, condition_file_Isensee,
data_file_Isensee, simulation_file_Isensee)
def test_save_plots_to_file(data_file_Isensee, condition_file_Isensee,
vis_spec_file_Isensee, simulation_file_Isensee):
with TemporaryDirectory() as temp_dir:
plot_with_vis_spec(vis_spec_file_Isensee, condition_file_Isensee,
data_file_Isensee, simulation_file_Isensee,
subplot_dir=temp_dir)