def testSynthTree(self):
cdict = self.treemachine.synthetic_tree_info
if self.treemachine.use_v1:
for key in ['draftTreeName', 'startNodeTaxName', 'startNodeID', 'startNodeOTTId']:
self.assertTrue(key in cdict)
tree_id = cdict['draftTreeName']
node_id = str(cdict['startNodeID']) # Odd that this is a string
x = self.treemachine.get_synthetic_tree(tree_id,
format='newick',
node_id=node_id,
max_depth=2)
self.assertEqual(x['treeID'], tree_id)
self.assertTrue(x['newick'].startswith('('))
else:
tree_id, node_id = test_tol_about(self, cdict)
# This now exceed the limit for tips in a tree, so expect HTTPError (400 Client Error: Bad Request)
# instead of the previously expected ValueError
self.assertRaises(HTTPError,
self.treemachine.get_synthetic_tree,
tree_id,
format='newick',
node_id=node_id)
def testSynthTree(self):
cdict = self.ot.tree_of_life.about()
tree_id, node_id = test_tol_about(self, cdict)
# this service is no longer supported, so returns an HTTPError
self.assertRaises(HTTPError, self.ot.tree_of_life.subtree, tree_id, format='newick', node_id=node_id)