def do_levels_batch(cf_batch):
batch_log_path = pfp_log.get_batch_log_path("logfiles")
batch_log_file_name = os.path.join(batch_log_path, "batch.log")
logger = pfp_log.init_logger("pfp_log", batch_log_file_name, to_file=True, to_screen=True)
start = datetime.datetime.now()
msg = " Started batch processing at " + start.strftime("%Y%m%d%H%M")
logger.info(msg)
if "Options" in cf_batch:
if "levels" in cf_batch["Options"]:
levels = pfp_cfg.cfg_string_to_list(cf_batch["Options"]["levels"])
else:
msg = "No 'levels' entry found in [Options] section"
logger.error(msg)
sys.exit()
else:
msg = "No [Options] section in control file"
logger.error(msg)
sys.exit()
processing_levels = ["l1", "l2", "l3",
"ecostress", "fluxnet", "reddyproc",
"concatenate", "climatology",
"cpd1", "cpd2", "mpt",
"l4", "l5", "l6"]
for level in levels:
if level.lower() not in processing_levels:
msg = "Unrecognised level " + level
logger.warning(msg)
continue
if level.lower() == "l1":
# L1 processing
do_L1_batch(cf_batch["Levels"][level])
elif level.lower() == "l2":
# L2 processing
do_L2_batch(cf_batch["Levels"][level])
elif level.lower() == "l3":
# L3 processing
do_L3_batch(cf_batch["Levels"][level])
elif level.lower() == "ecostress":
# convert netCDF files to ECOSTRESS CSV files
do_ecostress_batch(cf_batch["Levels"][level])
elif level.lower() == "fluxnet":
# convert netCDF files to FluxNet CSV files
do_fluxnet_batch(cf_batch["Levels"][level])
elif level.lower() == "reddyproc":
# convert netCDF files to REddyProc CSV files
do_reddyproc_batch(cf_batch["Levels"][level])
elif level.lower() == "concatenate":
# concatenate netCDF files
do_concatenate_batch(cf_batch["Levels"][level])
elif level.lower() == "climatology":
# climatology
do_climatology_batch(cf_batch["Levels"][level])
elif level.lower() == "cpd1":
# ustar threshold from change point detection
do_cpd1_batch(cf_batch["Levels"][level])
elif level.lower() == "cpd2":
# ustar threshold from change point detection
do_cpd2_batch(cf_batch["Levels"][level])
elif level.lower() == "mpt":
# ustar threshold from change point detection
do_mpt_batch(cf_batch["Levels"][level])
elif level.lower() == "l4":
# L4 processing
do_L4_batch(cf_batch["Levels"][level])
elif level.lower() == "l5":
# L5 processing
do_L5_batch(cf_batch["Levels"][level])
elif level.lower() == "l6":
# L6 processing
do_L6_batch(cf_batch["Levels"][level])
logger = pfp_log.change_logger_filename("pfp_log", "batch")
end = datetime.datetime.now()
msg = " Finished batch processing at " + end.strftime("%Y%m%d%H%M")
logger.info(msg)
return
# next we make sure the MPT directories are present ...
dir_list = ["./mpt/input", "./mpt/log", "./mpt/output"]
for item in dir_list:
if not os.path.exists(item):
os.makedirs(item)
# ... and make sure the MDS directories are present
dir_list = ["./mds/input", "./mds/log", "./mds/output"]
for item in dir_list:
if not os.path.exists(item):
os.makedirs(item)
now = datetime.datetime.now()
log_file_name = "pfp_" + now.strftime("%Y%m%d%H%M") + ".log"
log_file_name = os.path.join("./logfiles", log_file_name)
logger = pfp_log.init_logger("pfp_log",
log_file_name,
to_file=True,
to_screen=False)
class pfp_main_ui(QtWidgets.QWidget):
def __init__(self, pfp_version):
super(pfp_main_ui, self).__init__()
logTextBox = pfp_log.QPlainTextEditLogger(self)
logger.addHandler(logTextBox)
# menu bar
self.menubar = QtWidgets.QMenuBar(self)
# File menu
self.menuFile = QtWidgets.QMenu(self.menubar)
self.menuFile.setTitle("File")
import sys
sys.path.append('scripts')
import time
import pfp_clim
import pfp_cpd
import pfp_io
import pfp_log
import pfp_ls
import pfp_plot
import pfp_utils
t = time.localtime()
rundatetime = datetime.datetime(t[0], t[1], t[2], t[3], t[4],
t[5]).strftime("%Y%m%d%H%M")
log_file_name = 'batchprocess_' + rundatetime + '.log'
logger = pfp_log.init_logger(logger_name="pfp_log",
log_file_name=log_file_name)
# get the batch processing control file
if len(sys.argv) == 1:
cf_batch = pfp_io.load_controlfile(path='controlfiles')
if len(cf_batch) == 0: sys.exit()
else:
cfname = sys.argv[1]
if os.path.exists(cfname):
cf_batch = pfp_io.get_controlfilecontents(cfname)
else:
logger.error("Control file " + cfname + " does not exist")
sys.exit()
level_list = [
'L1', 'L2', 'L3', 'concatenate', 'climatology', 'cpd', 'L4', 'L5', 'L6'
