def test_read_in_gene_pars(self):
# read in test parameters in /data
test_file = os.path.join(working_dir, 'data',
'test_gene_parameters.csv')
res = stools.readInGenePars(test_file)
# COI minlen should be 'a different value'
self.assertEqual(res['COI']['minlen'], 'a different value')
def test_read_in_gene_pars(self):
# read in test parameters in /data
test_file = os.path.join(working_dir, 'data',
'test_gene_parameters.csv')
res = stools.readInGenePars(test_file)
# COI minlen should be 'a different value'
self.assertEqual(res['COI']['minlen'], 'a different value')
def setUp(self):
self.wd = os.path.join(working_dir, 'test_reset')
shutil.copytree(test_folder, self.wd)
self.paradict = readInPars('')
self.genedict = readInGenePars('')
self.reseter = rtools.Reseter(paradict=self.paradict,
genedict=self.genedict,
wd=self.wd)
self.reseter.verbose = False
def setUp(self):
self.wd = os.path.join(working_dir, 'test_reset')
shutil.copytree(test_folder, self.wd)
self.paradict = readInPars('')
self.genedict = readInGenePars('')
self.reseter = rtools.Reseter(paradict=self.paradict,
genedict=self.genedict,
wd=self.wd)
self.reseter.verbose = False
