def run_auto(kwik_path, clustering=None, interactive=False, **kwargs):
from phy.cluster import Session
if not op.exists(kwik_path):
print("The file `{}` doesn't exist.".format(kwik_path))
return
session = Session(kwik_path, use_store=False)
session.cluster(clustering=clustering, **kwargs)
session.save()
session.close()
def run_manual(kwik_path, clustering=None, interactive=False,
cluster_ids=None):
import phy
from phy.cluster import Session
from phy.gui import start_qt_app, run_qt_app
if not op.exists(kwik_path):
print("The file `{}` doesn't exist.".format(kwik_path))
return 1
print("\nLoading {}...".format(kwik_path))
session = Session(kwik_path,
clustering=clustering,
)
print("Data successfully loaded!\n")
session.model.describe()
start_qt_app()
gui = session.show_gui(cluster_ids=cluster_ids, show=False)
print("\nPress `ctrl+h` to see the list of keyboard shortcuts.\n")
# Interactive mode with IPython.
if interactive:
print("\nStarting IPython...")
from IPython import start_ipython
# Namespace.
ns = {'phy': phy,
'session': session,
'model': session.model,
'kwik_path': kwik_path,
'gui': gui,
}
start_ipython(["--gui=qt", "-i", "-c='gui.show()'"], user_ns=ns)
else:
gui.show()
run_qt_app()