def extract(self, path: Path, clean: bool = True):
"""
Extract the archive content.
Parameters
----------
path : Path
A non-existing directory path where the archive content is extracted
clean : bool (default: True)
Whether the archive content has to be cleaned from Mac OS hidden
files (.DS_STORE, __MACOSX).
"""
if path.exists() and not path.is_dir():
raise ArchiveError(
f"{self} cannot be extracted in {path} because "
f"it already exists or it is not a directory"
)
try:
shutil.unpack_archive(self.absolute(), path, self._format.name)
except shutil.ReadError as e:
raise ArchiveError(str(e))
if clean:
bad_filenames = ['.DS_STORE', '__MACOSX']
for bad_filename in bad_filenames:
for bad_path in path.rglob(bad_filename):
bad_path.unlink(missing_ok=True)
logging.basicConfig()
logger = logging.getLogger("upload")
logger.setLevel(logging.INFO)
# Run me with: CONFIG_FILE=/path/to/config.env python import_local_images.py --path /my/folder
if __name__ == '__main__':
parser = ArgumentParser(
prog="Import images sequentially to PIMS root from a local folder.")
parser.add_argument(
'--path', help="A directory with images to import, or an image path.")
params, _ = parser.parse_known_args(sys.argv[1:])
path = Path(params.path)
if not path.exists():
exit(-1)
if path.is_file():
image_paths = [path]
else:
image_paths = [p for p in path.recursive_iterdir() if p.is_file()]
for image_path in image_paths:
# We have to copy to file to pending path first to pass importer validation.
tmp_path = Path(PENDING_PATH) / image_path.name
shutil.copy(image_path, tmp_path)
try:
run_import(tmp_path, image_path.name, prefer_copy=False)
except Exception: # noqa
tmp_path.unlink(missing_ok=True)
def test_basic_file(app, settings):
path = Path(settings.root, "upload0/myfile.svs")
assert path.exists()
assert path.size == 0
assert (datetime.today() - path.creation_datetime).days == 0
