def test_detect_interesting_points(self):
image_file = data_dir + "/test/karyotype.bmp"
image = image_utils.read_image(image_file)
chromosomes = Pipeline.extract_chromosomes(image)
straightened_chromosomes = Pipeline.straighten_chromosomes(chromosomes)
_ = Pipeline.detect_interesting_points(straightened_chromosomes,
verbose=True)
def test_organize_chromosomes(self):
image_file = data_dir + "/test/karyotype.bmp"
image = Pipeline.read_image(image_file)
chromosomes = Pipeline.extract_chromosomes(image)
straightened_chromosomes = Pipeline.straighten_chromosomes(chromosomes)
# interesting_points = Pipeline.detect_interesting_points(straightened_chromosomes)
interesting_points = None
classified_chromosomes = Pipeline.classify_chromosomes(
straightened_chromosomes, interesting_points)
karyotyping_image = Pipeline.organize_chromosomes(
classified_chromosomes)
image_utils.show_image(karyotyping_image)
def test_straighten_chromosomes(self):
image_file = data_dir + "/test/karyotype.bmp"
image = image_utils.read_image(image_file)
chromosomes = Pipeline.extract_chromosomes(image)
_ = Pipeline.straighten_chromosomes(chromosomes, debug=True)
