def test_get_package_metadata_docs_require_error(self):
with open(os.path.join(self.dirname, 'requirements.optional.txt'), 'w') as file:
file.write('[docs]\n')
file.write('req1\n')
with self.assertRaisesRegex(ValueError, '^Documentation dependencies should be defined in `docs/requirements`$'):
pkg_utils.get_package_metadata(self.dirname, 'package')
result = subprocess.run([sys.executable, "-m", "pip", "show", "pkg_utils"],
check=True,
capture_output=True)
match = re.search(r'\nVersion: (.*?)\n', result.stdout.decode(), re.DOTALL)
assert match and tuple(match.group(1).split('.')) >= ('0', '0', '5')
except (subprocess.CalledProcessError, AssertionError):
subprocess.run([sys.executable, "-m", "pip", "install", "-U", "pkg_utils"],
check=True)
import os
import pkg_utils
name = '<my_simulator>'
dirname = os.path.dirname(__file__)
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name)
with open(os.path.join(os.path.dirname(__file__), 'README.md'), 'r') as file:
long_description = file.read()
# install package
setuptools.setup(
name=name,
version=md.version,
description=(
"BioSimulators-compliant command-line interface to "
"the <MySimulator> simulation program <https://url.for.my.simulator>."
),
long_description=long_description,
long_description_content_type='text/markdown',
url="https://github.com/<organization>/<repository>",
download_url="https://github.com/<organization>/<repository>",
subprocess.run([sys.executable, "-m", "pip", "install", "-U", "pkg_utils"],
check=True)
import os
import pkg_utils
name = 'wc_kb'
dirname = os.path.dirname(__file__)
package_data = {
name: [
'config/core.default.cfg',
'config/core.schema.cfg',
],
}
# get package metadata
md = pkg_utils.get_package_metadata(
dirname, name, package_data_filename_patterns=package_data)
# install package
setuptools.setup(
name=name,
version=md.version,
description=
"Tools for building and describing knowledge bases for whole-cell models",
long_description=md.long_description,
url="https://github.com/KarrLab/" + name,
download_url='https://github.com/KarrLab/' + name,
author="Karr Lab",
author_email="*****@*****.**",
license="MIT",
keywords='whole-cell systems biology',
packages=setuptools.find_packages(exclude=['tests', 'tests.*']),
import setuptools
try:
import pkg_utils
except ImportError:
import pip._internal
pip._internal.main(['install', 'pkg_utils'])
import pkg_utils
import os
name = 'nose2unitth'
dirname = os.path.dirname(__file__)
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name)
# install package
setuptools.setup(
name=name,
version=md.version,
description="Convert nose-style test reports to UnitTH-style test reports",
long_description=md.long_description,
url="https://github.com/KarrLab/" + name,
download_url='https://github.com/KarrLab/' + name,
author="Jonathan Karr",
author_email="*****@*****.**",
license="MIT",
keywords='nose unitth xunit junit',
packages=setuptools.find_packages(exclude=['tests', 'tests.*']),
package_data={
name: [
'VERSION',
import os
import sys
name = 'karr_lab_build_utils'
dirname = os.path.dirname(__file__)
package_data = {
name: [
'VERSION',
'templates/*',
'templates/**/*',
'config/*.cfg',
],
}
# get package metadata
md = pkg_utils.get_package_metadata(dirname, name, package_data_filename_patterns=package_data)
# read old console scripts
console_scripts = pkg_utils.get_console_scripts(dirname, name)
# install package
setuptools.setup(
name=name,
version=md.version,
description="Karr Lab build utilities",
long_description=md.long_description,
url="https://github.com/KarrLab/" + name,
download_url='https://github.com/KarrLab/' + name,
author="Jonathan Karr",
author_email="*****@*****.**",
license="MIT",
def test_get_package_metadata(self):
pkg_utils.convert_readme_md_to_rst(self.dirname)
md = pkg_utils.get_package_metadata(self.dirname, 'package')
self.assertEqual(md.long_description, 'Test\n====\n')
self.assertEqual(md.version, '0.0.1')
self.assertEqual(md.install_requires, [
'req1',
'req2[opt2]',
'req3 >= 1.0',
'req4; python_version > "2.6"',
])
self.assertEqual(md.tests_require, [
'req9',
])
self.assertEqual(md.extras_require, {
'package_opt_1': [
'req7',
],
'package_opt_2': [
'req10[option10]',
'req8[opt8a, opt8b]',
'req9[opt9a, opt9b]',
],
'tests': [
'req9',
],
'docs': [
'req10',
'req11',
'req12[opt12a, opt12b] <= 1.0, >= 2.0; python_version>="2.7"',
'req13[opt13a, opt13b]; python_version >= "2.7"',
'req14[opt13a, opt13b]; python_version >= "2.7"',
'req15; python_version >= "2.7"',
'req16',
'req17',
'req18',
],
'all': [
'req10',
'req10[option10]',
'req11',
'req12[opt12a, opt12b] <= 1.0, >= 2.0; python_version>="2.7"',
'req13[opt13a, opt13b]; python_version >= "2.7"',
'req14[opt13a, opt13b]; python_version >= "2.7"',
'req15; python_version >= "2.7"',
'req16',
'req17',
'req18',
'req7',
'req8[opt8a, opt8b]',
'req9',
'req9[opt9a, opt9b]',
],
})
self.assertEqual(md.dependency_links, [
'git+https://github.com/opt/req10.git@branch#egg=req10-10.1.2',
'git+https://github.com/opt/req14.git#egg=req14-14.1.2',
'git+https://github.com/opt/req15.git#egg=req15-15.1.2',
'git+https://github.com/opt/req16.git#egg=req16-16.1.2',
'git+https://github.com/opt/req17.git#egg=req17-17.1.2',
'git+https://github.com/opt/req18.git@branch#egg=req18-18.1.2',
])
