def cli(ctx, **kwds):
"""Generate a tool outline from supplied arguments.
"""
invalid = _validate_kwds(kwds)
if invalid:
return invalid
output = kwds.get("tool")
if not output:
output = "%s.xml" % kwds.get("id")
if not io.can_write_to_path(output, **kwds):
sys.exit(1)
tool_description = tool_builder.build(**kwds)
open(output, "w").write(tool_description.contents)
io.info("Tool written to %s" % output)
macros = kwds["macros"]
macros_file = "macros.xml"
if macros and not os.path.exists(macros_file):
open(macros_file, "w").write(tool_description.macro_contents)
else:
io.info(REUSING_MACROS_MESSAGE)
if tool_description.test_files:
if not os.path.exists("test-data"):
io.info("No test-data directory, creating one.")
io.shell("mkdir -p 'test-data'")
for test_file in tool_description.test_files:
io.info("Copying test-file %s" % test_file)
io.shell("cp '%s' 'test-data'" % test_file)
def cli(ctx, **kwds):
"""Generate a tool outline from supplied arguments.
"""
invalid = _validate_kwds(kwds)
if invalid:
return invalid
output = kwds.get("tool")
if not output:
output = "%s.xml" % kwds.get("id")
if not io.can_write_to_path(output, **kwds):
sys.exit(1)
tool_description = tool_builder.build(**kwds)
open(output, "w").write(tool_description.contents)
io.info("Tool written to %s" % output)
macros = kwds["macros"]
macros_file = "macros.xml"
if macros and not os.path.exists(macros_file):
open(macros_file, "w").write(tool_description.macro_contents)
elif macros:
io.info(REUSING_MACROS_MESSAGE)
if tool_description.test_files:
if not os.path.exists("test-data"):
io.info("No test-data directory, creating one.")
io.shell("mkdir -p 'test-data'")
for test_file in tool_description.test_files:
io.info("Copying test-file %s" % test_file)
io.shell("cp '%s' 'test-data'" % test_file)
def cli(ctx, **kwds):
"""Generate tool outline from given arguments."""
invalid = _validate_kwds(kwds)
if invalid:
ctx.exit(invalid)
tool_description = tool_builder.build(**kwds)
tool_builder.write_tool_description(ctx, tool_description, **kwds)
def cli(ctx, **kwds):
"""Generate tool outline from given arguments."""
invalid = _validate_kwds(kwds)
if invalid:
ctx.exit(invalid)
tool_description = tool_builder.build(**kwds)
tool_builder.write_tool_description(
ctx, tool_description, **kwds
)
def cli(ctx, **kwds):
"""Generate a tool outline from supplied arguments."""
invalid = _validate_kwds(kwds)
tool_id = kwds.get("id")
if invalid:
ctx.exit(invalid)
output = kwds.get("tool")
if not output:
extension = "cwl" if kwds.get("cwl") else "xml"
output = "%s.%s" % (tool_id, extension)
if not io.can_write_to_path(output, **kwds):
ctx.exit(1)
tool_description = tool_builder.build(**kwds)
io.write_file(output, tool_description.contents)
io.info("Tool written to %s" % output)
test_contents = tool_description.test_contents
if test_contents:
sep = "-" if "-" in tool_id else "_"
tests_path = "%s%stests.yml" % (kwds.get("id"), sep)
if not io.can_write_to_path(tests_path, **kwds):
ctx.exit(1)
io.write_file(tests_path, test_contents)
io.info("Tool tests written to %s" % tests_path)
macros = kwds["macros"]
macros_file = "macros.xml"
if macros and not os.path.exists(macros_file):
io.write_file(macros_file, tool_description.macro_contents)
elif macros:
io.info(REUSING_MACROS_MESSAGE)
if tool_description.test_files:
if not os.path.exists("test-data"):
io.info("No test-data directory, creating one.")
io.shell("mkdir -p 'test-data'")
for test_file in tool_description.test_files:
io.info("Copying test-file %s" % test_file)
io.shell("cp '%s' 'test-data'" % test_file)
