# Use the image series UID for the file of the RTStruct
suid = pydicom.dcmread(dicom_file).SeriesInstanceUID
output_file = os.path.join(working_dir, "RS.{0}.dcm".format(suid))
# Use the convert nifti function to generate RTStruct from nifti masks
convert_nifti(dicom_file, masks, output_file)
# Create the Data Object for the RTStruct and add it to the list
do = DataObject(type="DICOM", path=output_file, parent=d)
output_objects.append(do)
logger.info("RTStruct generated")
return output_objects
if __name__ == "__main__":
# Run app by calling "python sample.py" from the command line
dicom_listener_port = 7777
dicom_listener_aetitle = "SAMPLE_SERVICE"
app.run(
debug=True,
host="0.0.0.0",
port=8000,
dicom_listener_port=dicom_listener_port,
dicom_listener_aetitle=dicom_listener_aetitle,
)
# # Use the image series UID for the file of the RTStruct
# suid = pydicom.dcmread(dicom_file).SeriesInstanceUID
# output_file = os.path.join(working_dir, 'RS.{0}.dcm'.format(suid))
# # Use the convert nifti function to generate RTStruct from nifti masks
# convert_nifti(dicom_file, masks, output_file)
# # Create the Data Object for the RTStruct and add it to the list
# do = DataObject(type='DICOM', path=output_file, parent=d)
# output_objects.append(do)
# logger.info('RTStruct generated')
return output_objects
if __name__ == "__main__":
# Run app by calling "python sample.py" from the command line
DICOM_LISTENER_PORT = 7777
DICOM_LISTENER_AETITLE = "SAMPLE_SERVICE"
app.run(
debug=True,
host="0.0.0.0",
port=8000,
dicom_listener_port=DICOM_LISTENER_PORT,
dicom_listener_aetitle=DICOM_LISTENER_AETITLE,
)