Esempio n. 1
0
 def test_replace_types_fail():
     lines = """
     [ defaults ]
     1.0   1.0   yes  1.0     1.0
     [ dihedraltypes ]
     C   Q    Q     Q    5   123.50	401.664	0.0	0.0
     [ moleculetype ]
     test 3
     [ atoms ]
     1 CT2   1 test C1 1   0.0 14.0
     2 CE2   1 test C2 2   0.0 12.0
     3 CE1   1 test C3 3   0.0 12.0
     4 CT2   1 test C4 4   0.0 12.0
     [ dihedrals ]
     1  2  3  4 2
     [ system ]
     some title
     [ molecules ]
     test 1
     """
     new_lines = textwrap.dedent(lines)
     new_lines = new_lines.splitlines()
     force_field = vermouth.forcefield.ForceField(name='test_ff')
     top = Topology(force_field, name="test")
     polyply.src.top_parser.read_topology(new_lines, top)
     with pytest.raises(OSError):
         top.gen_bonded_interactions()
Esempio n. 2
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 def test_replace_types(lines, outcome):
     new_lines = textwrap.dedent(lines)
     new_lines = new_lines.splitlines()
     force_field = vermouth.forcefield.ForceField(name='test_ff')
     top = Topology(force_field, name="test")
     polyply.src.top_parser.read_topology(new_lines, top)
     top.gen_bonded_interactions()
     for inter_type in outcome:
         assert top.molecules[0].molecule.interactions[
             inter_type] == outcome[inter_type]